PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 117aa MW: 13789.3 Da PI: 10.464

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00517.1_g00011.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.5	5.6e-30	6	96	8	98
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 r kC ++Cvl py+pa++p+k+a++ k+FG ++++++l+++++++r++ ++sl++eAear+rdPvyG vg+i++lq++l++l+ l+ Rsa1.0_00517.1_g00011.1 6 TRAKCRQECVLTPYLPANKPEKYACLMKVFGKKKLVRYLNEIDPSQRQACVDSLIFEAEARIRDPVYGTVGIIHRLQRRLQHLQLSLK 93 5789*******************************************************************************99888 PP DUF260 96 llk 98 ++ Rsa1.0_00517.1_g00011.1 94 IAR 96 766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.409	1	99	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.6E-29	6	95	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MELCATRAKC RQECVLTPYL PANKPEKYAC LMKVFGKKKL VRYLNEIDPS QRQACVDSLI 60 FEAEARIRDP VYGTVGIIHR LQRRLQHLQL SLKIARWELA KLKHEQNHRH LVIRSRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-26	7	99	19	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-26	7	99	19	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00517.1_g00011.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006468642.1	7e-30	protein ASYMMETRIC LEAVES 2
Refseq	XP_006468643.1	7e-30	protein ASYMMETRIC LEAVES 2
Swissprot	Q9FKZ3	2e-27	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A397YVE5	2e-51	A0A397YVE5_BRACM; Uncharacterized protein
STRING	Bostr.6864s0195.1.p	2e-31	(Boechera stricta)
STRING	XP_010507369.1	9e-31	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	5e-27	LBD family protein

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]