PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 805aa MW: 92190.5 Da PI: 7.9902

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00512.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.2	1.5e-19	59	133	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 ++Yn+YA ++GF+ r+ + ++s+++g++ +r+fvCskeg++ + +rtgC+a ++v+++++gkw+++++++eHn Rsa1.0_00512.1_g00002.1 59 EYYNAYAARTGFKARTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHN 130 69************************************876..............589************************ PP FAR1 87 Hel 89 Hel Rsa1.0_00512.1_g00002.1 131 HEL 133 *98 PP
2	FAR1	64.2	3.6e-20	231	307	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY++YA+ vGF+vr+ + +sk +++it+r+fvCs+eg+++++ r+gC a +++k++++g w v++l ++Hn Rsa1.0_00512.1_g00002.1 231 QFYQAYAEVVGFRVRIGQLFRSKVDNSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLCKDHN 302 6*************************************9994..............799********************* PP FAR1 87 Helap 91 H+l p Rsa1.0_00512.1_g00002.1 303 HDLEP 307 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-15	59	133	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.1E-15	231	307	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-25	414	505	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.361	691	727	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.2E-7	702	724	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.1E-8	702	729	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence Send to blast
MESSATEQHS SFNNMVTKAY PLRILNHTTT DEHVNSGGGG GAAEPYVGLE FDTAEEAREY 60 YNAYAARTGF KARTGQLYRS RTDGTVSSRR FVCSKEGFQL NSRTGCTAFI RVQRRDTGKW 120 VLDQIQKEHN HELGCEAEEM TVATTPRPVR APAPTKLAAT VNQHRPKMKV VDESDREQRS 180 SSSKSTSLKR FKSGEGEVSN DGHHNHHNPK AVSGSEPYAG LEFGSANEAC QFYQAYAEVV 240 GFRVRIGQLF RSKVDNSITS RRFVCSREGF QHPSRMGCGA YMRIKRQDSG GWIVDRLCKD 300 HNHDLEPGKK NQDGVKKITE DVMMTGGGGL DSVDLIELNN SNHIKKAATS SSSRENRIGK 360 EWYPLLLDYF QSKQTEDMGF FYAVELDVHS GSCLSVFWAD SRARFACSQF GDAVVFDTSY 420 RKGSYSVPFA TFVGFNHHRQ PVLLGCAVVA DESKESFLWL FQTWLRAMSG RPPRSVVADQ 480 DLPIKQALSQ VFPGAHHRYS AWQMRERERE NLRPFPSEFK YEYEKCIYQT QTVLEFDSVW 540 NTLINKYGLR DDVWLREVYE QREHWVPAYL RGSFFAGIPI NGAFEPFFSA SSSSLDALTP 600 LREFIGRYEQ GLEQRREEER KEDFNSYNLQ PFLQTKEPVE EQCRRLYTLT VFRIFQNELV 660 QSYSYLCLKT YEEGAMSRFL VRKCGNESEK HAVTFNATNL NSSCSCQMFE HEGLLCRHVL 720 KVFNLLEVKE LPSRYILHRW TKNAEFGFVR DMESGVSSQD LKALMVWSLR EAASKYIEFG 780 TSSLEKYKLA YEIMREGGKK LCWQR

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence Send to blast

MESSATEQHS SFNNMVTKAY PLRILNHTTT DEHVNSGGGG GAAEPYVGLE FDTAEEAREY  60
YNAYAARTGF KARTGQLYRS RTDGTVSSRR FVCSKEGFQL NSRTGCTAFI RVQRRDTGKW  120
VLDQIQKEHN HELGCEAEEM TVATTPRPVR APAPTKLAAT VNQHRPKMKV VDESDREQRS  180
SSSKSTSLKR FKSGEGEVSN DGHHNHHNPK AVSGSEPYAG LEFGSANEAC QFYQAYAEVV  240
GFRVRIGQLF RSKVDNSITS RRFVCSREGF QHPSRMGCGA YMRIKRQDSG GWIVDRLCKD  300
HNHDLEPGKK NQDGVKKITE DVMMTGGGGL DSVDLIELNN SNHIKKAATS SSSRENRIGK  360
EWYPLLLDYF QSKQTEDMGF FYAVELDVHS GSCLSVFWAD SRARFACSQF GDAVVFDTSY  420
RKGSYSVPFA TFVGFNHHRQ PVLLGCAVVA DESKESFLWL FQTWLRAMSG RPPRSVVADQ  480
DLPIKQALSQ VFPGAHHRYS AWQMRERERE NLRPFPSEFK YEYEKCIYQT QTVLEFDSVW  540
NTLINKYGLR DDVWLREVYE QREHWVPAYL RGSFFAGIPI NGAFEPFFSA SSSSLDALTP  600
LREFIGRYEQ GLEQRREEER KEDFNSYNLQ PFLQTKEPVE EQCRRLYTLT VFRIFQNELV  660
QSYSYLCLKT YEEGAMSRFL VRKCGNESEK HAVTFNATNL NSSCSCQMFE HEGLLCRHVL  720
KVFNLLEVKE LPSRYILHRW TKNAEFGFVR DMESGVSSQD LKALMVWSLR EAASKYIEFG  780
TSSLEKYKLA YEIMREGGKK LCWQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00512.1_g00002.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018476471.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X1
Refseq	XP_018476472.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X1
Swissprot	Q3E7I5	0.0	FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBL	A0A0D3B1W2	0.0	A0A0D3B1W2_BRAOL; Uncharacterized protein
STRING	Bo3g013440.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	0.0	FAR1-related sequence 12

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]