PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 773aa MW: 89079.1 Da PI: 6.5107

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00510.1_g00015.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.4	3.7e-31	74	166	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r++tr+gCka+l vk+++ +gkw v+ +++e Rsa1.0_00510.1_g00015.1 74 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTVTRVGCKASLSVKMHDsSGKWIVSGFVKE 159 9*************************************999888555677889*************99******** PP FAR1 85 HnHelap 91 HnHel+p Rsa1.0_00510.1_g00015.1 160 HNHELVP 166 ***86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-29	74	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-30	295	390	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.423	566	614	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-10	566	612	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-7	589	616	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MDNEEVLDFD VDDDDGIDIE HNDSIDILDD SPIPDTTTTT NPDSSAAHYY FPDGDLLEPY 60 DGLEFESEES AKAFYNSYAR RVGFSTRVSS SRRSRRDGAI IQRQFVCAKE GFRNMNEKRT 120 KDREIKRPRT VTRVGCKASL SVKMHDSSGK WIVSGFVKEH NHELVPPDQV HCLRSHRQIS 180 GPAKTLIDTL QAAGMGPRRI MSALIKEYGG ISKVGFTEVD CRNYMRNNRQ KSIQGEIQLL 240 LDYLRQMNSE NPTFFYAVQR SEDNHHHDHQ SVVVGNVFWA DPKAILDFAY FGDTVTFDTT 300 YRSNRYRLPF APFTGVNHHG QPVLFGCAFI VNETEASFVW LFKTWLAAMS AHAARSPVSI 360 TTDHDAVIRA AVVQVFPEAR HRFCKWHIFK KCQEKLSHVF LRHPSFESDF HKSVNLTDSV 420 EDFESCWFSL LDKYELRDHD WLQALYSDRR QWVPVYLRDT FFAEMSSTQR SDSINSYFDG 480 YINASTNLTQ FFKLYEKALE SRLEKEVKAD YDTMNSPPVL KTPSPMEKQA SELYTRKLFT 540 RFQEELVGTL TFMASKADDD GDLGTYQVAK YGETHKAHCV KFNILEMRAN CSCQMFEFSG 600 IVCRHILAVF RVTNLLTLPP YYILKRWTRN AKSSVIFDDY GLHAYDNYLE SHTVRYNTLR 660 HKAFNFVQEA GKSIYTCDVA LVALQEAAKT VSLEMKNEVR RTMANGHVKG SSASDGEHIR 720 RSEECQQEEP EVDEMDKKII ELRHELELAN RKCEAYRTNL LSVLKELEDQ KSA

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MDNEEVLDFD VDDDDGIDIE HNDSIDILDD SPIPDTTTTT NPDSSAAHYY FPDGDLLEPY  60
DGLEFESEES AKAFYNSYAR RVGFSTRVSS SRRSRRDGAI IQRQFVCAKE GFRNMNEKRT  120
KDREIKRPRT VTRVGCKASL SVKMHDSSGK WIVSGFVKEH NHELVPPDQV HCLRSHRQIS  180
GPAKTLIDTL QAAGMGPRRI MSALIKEYGG ISKVGFTEVD CRNYMRNNRQ KSIQGEIQLL  240
LDYLRQMNSE NPTFFYAVQR SEDNHHHDHQ SVVVGNVFWA DPKAILDFAY FGDTVTFDTT  300
YRSNRYRLPF APFTGVNHHG QPVLFGCAFI VNETEASFVW LFKTWLAAMS AHAARSPVSI  360
TTDHDAVIRA AVVQVFPEAR HRFCKWHIFK KCQEKLSHVF LRHPSFESDF HKSVNLTDSV  420
EDFESCWFSL LDKYELRDHD WLQALYSDRR QWVPVYLRDT FFAEMSSTQR SDSINSYFDG  480
YINASTNLTQ FFKLYEKALE SRLEKEVKAD YDTMNSPPVL KTPSPMEKQA SELYTRKLFT  540
RFQEELVGTL TFMASKADDD GDLGTYQVAK YGETHKAHCV KFNILEMRAN CSCQMFEFSG  600
IVCRHILAVF RVTNLLTLPP YYILKRWTRN AKSSVIFDDY GLHAYDNYLE SHTVRYNTLR  660
HKAFNFVQEA GKSIYTCDVA LVALQEAAKT VSLEMKNEVR RTMANGHVKG SSASDGEHIR  720
RSEECQQEEP EVDEMDKKII ELRHELELAN RKCEAYRTNL LSVLKELEDQ KSA

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00510.1_g00015.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477030.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A397ZWL4	0.0	A0A397ZWL4_BRACM; Uncharacterized protein
STRING	Bo3g034290.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]