PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 226aa MW: 25124.9 Da PI: 5.3981

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00503.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.1	2.6e-19	102	152	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ng +r++lg++ t+e+Aa a+++a+ +l+g Rsa1.0_00503.1_g00007.1 102 QYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETPEDAAVAYDRAAFQLKG 152 59*****.*******9998..*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	8.5E-23	102	161	IPR016177	DNA-binding domain
CDD	cd00018	1.79E-30	102	162	No hit	No description
PROSITE profile	PS51032	23.907	102	160	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.1E-32	102	161	IPR001471	AP2/ERF domain
SMART	SM00380	3.7E-36	102	166	IPR001471	AP2/ERF domain
Pfam	PF00847	8.3E-13	103	152	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.4E-13	103	114	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.4E-13	142	162	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSGFDYSELM SSPDSVNNGV NPPVFYRNPS FSNVILNDSW SDLPLSVDDS QDMAIYNTLR 60 DAFSSGWSPT VPPISSPAVV EEEKPATATA TAKAAPRQKG MQYRGVRRRP WGKFAAEIRD 120 PKKNGARVWL GTYETPEDAA VAYDRAAFQL KGSKAKLNFP HLIGTCEYEP VRIRPRRRSP 180 EPSVSDYSSP EQKSVGHVEE GESSFAVDQL YSDGGYLMDR SSYSYF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-31	99	167	2	70	ATERF1
3gcc_A	2e-31	99	167	2	70	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:11950980}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00311	DAP	Transfer from AT2G44840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00503.1_g00007.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269\|PubMed:11950980, ECO:0000269\|PubMed:12068110}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478704.1	1e-166	PREDICTED: ethylene-responsive transcription factor 13-like
Swissprot	Q8L9K1	1e-123	ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBL	A0A078GDM4	1e-138	A0A078GDM4_BRANA; BnaC04g49870D protein
TrEMBL	A0A078GZB8	1e-138	A0A078GZB8_BRANA; BnaA04g25900D protein
TrEMBL	A0A3P6CCL1	1e-138	A0A3P6CCL1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6D0C9	1e-138	A0A3P6D0C9_BRACM; Uncharacterized protein
TrEMBL	M4F967	1e-138	M4F967_BRARP; Uncharacterized protein
STRING	Bra037630.1-P	1e-139	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	1e-100	ethylene-responsive element binding factor 13

Publications ? help Back to Top
Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum. Plant Physiol., 2007. 145(4): p. 1588-99 [PMID:17965181] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]