PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00500.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 303aa    MW: 34409.1 Da    PI: 6.3588
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00500.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00037426123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ykC  C ksF +   L  H+r+H
  Rsa1.0_00500.1_g00003.1  4 YKCRLCFKSFINGRALGGHMRSH 26
                             9*********************9 PP
2zf-C2H215.55e-05172194123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC+ Cgk+F++   L  H  +H
  Rsa1.0_00500.1_g00003.1 172 FKCETCGKVFKSYQALGGHRASH 194
                              89***********9999998887 PP
3zf-C2H212.60.0004225247123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+C ++F++   L  H r+H
  Rsa1.0_00500.1_g00003.1 225 HQCPICFRVFTSGQALGGHKRSH 247
                              79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.6E-4326IPR007087Zinc finger, C2H2
SuperFamilySSF576672.93E-9326No hitNo description
PROSITE profilePS5015710.72431IPR007087Zinc finger, C2H2
SMARTSM003550.056426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576672.93E-9167194No hitNo description
PfamPF139121.9E-11171196IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.676172199IPR007087Zinc finger, C2H2
SMARTSM003550.013172194IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
SuperFamilySSF576673.64E-5220250No hitNo description
PfamPF139121.8E-10224247IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369225252IPR007087Zinc finger, C2H2
SMARTSM003550.08225247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280227247IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MERYKCRLCF KSFINGRALG GHMRSHILTL PSKRELYELT APPSQLSEET ESDASASSDE  60
EEDDVNCGEF ESETESSRMN PTRKRSKRTR KLGSFDFEFK KVRTSQPGEV VTEPEHHSSA  120
SDTTTEEDLA FCLIMLSRDK WKQQKNKTIV VEEDDDDEDY KSSKNSGGRG RFKCETCGKV  180
FKSYQALGGH RASHKKNKTF TTMTSTKTEH EKTEYGNGVT EKKVHQCPIC FRVFTSGQAL  240
GGHKRSHGSN NVNIGSRREL SVNQSVPSVK EEEEEVEVKQ RMIDLNLPAP NEDDETSVVF  300
NEW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00500.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893990.0AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467285.10.0PREDICTED: zinc finger protein ZAT4-like
SwissprotQ9SHD01e-125ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLM4C8441e-155M4C844_BRARP; Uncharacterized protein
STRINGBra000372.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-106C2H2-like zinc finger protein