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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_00497.1_g00002.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 279aa MW: 31323.4 Da PI: 10.0128 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00497.1_g00002.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 342.2 | 1.3e-104 | 1 | 279 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa..aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkal 74
mdddg+ rn+gyyepa +++k nlglqlmss +r++k+ r+ nl +++++++++++ m++ +++++
Rsa1.0_00497.1_g00002.1 1 MDDDGF--RNWGYYEPAaaTTFKGNLGLQLMSSA-DRNTKPflpgRDPNL-MMSQNGSYHHHHseppihMSY----NWINQ----- 73
99**99..9******99889*************9.9**************.888888888887788888888....9****..... PP
GAGA_bind 75 verdnkllalllvenslasalpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakk 158
+++k++++l+v+++ p++ ++l++t+s+ s++++++ +q+e+++v+ +eee++ + + ++k+k++++++a++
Rsa1.0_00497.1_g00002.1 74 --QKDKFFNMLPVTTT-----PNYGNALPETSSAPSMHHHHHhhHQTEETPVKCEEEEETVQ-------P--NKKRKTNSKASATT 143
..899*******9986.....9999********99999855534677777776444442221.......2..22333333466777 PP
GAGA_bind 159 pkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244
+k kk +k+k+ ++++k++ +r+k kks+dlv+ngv++D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PL
Rsa1.0_00497.1_g00002.1 144 TKGKKPRKPKE-----ENDNKTNV--SRVKPAKKSVDLVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPL 222
77777777777.....23444444..689********************************************************* PP
GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
P+stkrrgaRi+grKmSqgafkk+LekL+++G++++ p+DLk+hWA+HGtnkfvtir
Rsa1.0_00497.1_g00002.1 223 PMSTKRRGARISGRKMSQGAFKKVLEKLSSDGFNFGSPIDLKSHWARHGTNKFVTIR 279
********************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MDDDGFRNWG YYEPAAATTF KGNLGLQLMS SADRNTKPFL PGRDPNLMMS QNGSYHHHHS 60
EPPIHMSYNW INQQKDKFFN MLPVTTTPNY GNALPETSSA PSMHHHHHHH HQTEETPVKC 120
EEEEETVQPN KKRKTNSKAS ATTTKGKKPR KPKEENDNKT NVSRVKPAKK SVDLVINGVN 180
MDISGLPVPV CTCTGAPQQC YRWGCGGWQS ACCTTNISMH PLPMSTKRRG ARISGRKMSQ 240
GAFKKVLEKL SSDGFNFGSP IDLKSHWARH GTNKFVTIR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
