PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 254aa MW: 28501.2 Da PI: 4.8372

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00496.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.9	2.2e-17	96	145	2	54
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 y+GVr ++ +g+++AeIrd + ng r++lg+f+ aeeAa a+++a+ + + Rsa1.0_00496.1_g00003.1 96 SYRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFATK 145 69*****.******44465..*******************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.69E-28	95	155	No hit	No description
Pfam	PF00847	1.9E-11	96	143	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.3E-29	96	155	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.09E-21	96	156	IPR016177	DNA-binding domain
SMART	SM00380	2.7E-35	96	160	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.878	96	154	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.4E-10	97	108	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.4E-10	120	136	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MYSSPSSWSS SQESFLWDES SFLDQSSNHQ SFFSVDYIYS DDSNHQSFLC PSYNYSNDFF 60 SFESPEMMIK EESQNADVSN SEEEEKIGSV IDEEKSYRGV RKRPWGKFAA EIRDSTRNGI 120 RVWLGTFDKA EEAALAYDQA AFATKGSLAI LNFPVEVVRE SLKKMENVNL EDGGSPIMAL 180 KRKHSLRNRP RGKKRSNSLS CSSNSSSSTS SSSSSSTSRS RNDKQSVVKQ ESGTLVVFED 240 LGAEYLEQLL MSSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-28	95	157	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11950980}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00286	DAP	Transfer from AT2G31230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00496.1_g00003.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269\|PubMed:11950980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189433	0.0	AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018481294.1	0.0	PREDICTED: ethylene-responsive transcription factor 15-like
Swissprot	Q8VYM0	1e-124	ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBL	A0A078FRC8	1e-143	A0A078FRC8_BRANA; BnaC04g42060D protein
TrEMBL	A0A0D3C3D6	1e-143	A0A0D3C3D6_BRAOL; Uncharacterized protein
STRING	Bo4g176080.1	1e-143	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3990	18	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31230.1	1e-109	ethylene-responsive element binding factor 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang H, et al. Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea. Front Plant Sci, 2015. 6: p. 686 [PMID:26388886]