PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00489.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 176aa    MW: 20215.8 Da    PI: 7.544
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00489.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-3294152159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+rsa+dpk++++tYeg Hnh+
  Rsa1.0_00489.1_g00007.1  94 LDDGYRWRKYGQKSVKNNGHPRSYYRCTYHTCNVKKQVQRSAKDPKIIVTTYEGIHNHP 152
                              59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3281152IPR003657WRKY domain
SuperFamilySSF1182901.83E-2886153IPR003657WRKY domain
PROSITE profilePS5081129.89589154IPR003657WRKY domain
SMARTSM007743.0E-3794153IPR003657WRKY domain
PfamPF031062.0E-2695152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDIQDINPPT LSLDVENSDN TFSSFVDETL MMMPPLALPG ELEPSSSSWC PTSFHVPTQP  60
PENDQIGGQG KKKDKRSMKV PRIEFHTRSD DDVLDDGYRW RKYGQKSVKN NGHPRSYYRC  120
TYHTCNVKKQ VQRSAKDPKI IVTTYEGIHN HPCEKLMETL NPLIRQLQFL SSFSNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2685151874Probable WRKY transcription factor 4
2lex_A2e-2685151874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00489.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300420.0KF430042.1 Brassica rapa WRKY transcription factor 24 (WRKY24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484294.11e-130PREDICTED: probable WRKY transcription factor 24
SwissprotQ9FFS33e-97WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A078I3P21e-120A0A078I3P2_BRANA; BnaCnng11190D protein
TrEMBLA0A0D3C0H41e-120A0A0D3C0H4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C9J51e-120A0A3P6C9J5_BRAOL; Uncharacterized protein
STRINGBo4g142200.11e-121(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.14e-91WRKY DNA-binding protein 24