PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00484.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 268aa    MW: 30634.9 Da    PI: 7.1805
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00484.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.87.8e-1323115399
                              EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                              k l+p  + ks ++ ++p + a++++     +  ++++ ++ +sW++ l+  + ++  +++++ W eFv++n L + D++vF+++g
  Rsa1.0_00484.1_g00010.1  23 KSLSPGQNWKSkSMRIIPQEIARSNQAA--FEHRVVFTVPWKNSWQLWLQ--RDKNClFMIKEDWDEFVDDNLLGSDDTLVFTHQG 104
                              5555555555524558999999999755..5568***************4..444434*************************999 PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                              ++ f   v++f+k
  Rsa1.0_00484.1_g00010.1 105 TMYF--QVRIFKK 115
                              8888..8998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-1516117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1517116IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.3E-1421116IPR003340B3 DNA binding domain
CDDcd100172.14E-1121114No hitNo description
PROSITE profilePS5086310.67322116IPR003340B3 DNA binding domain
PfamPF023626.0E-1033115IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-8167252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-6168261IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0028174264IPR003340B3 DNA binding domain
PROSITE profilePS508637.613230268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MKRKVSPESE IHENQAKKIT FSKSLSPGQN WKSKSMRIIP QEIARSNQAA FEHRVVFTVP  60
WKNSWQLWLQ RDKNCLFMIK EDWDEFVDDN LLGSDDTLVF THQGTMYFQV RIFKKDGKEV  120
VSAPLKVPEP ETEPVILHPK PESSHQELTT PASASGGKES FAERCLLNPN IPYFEKTLSK  180
TNKILYVSPL VIKKYDLEFG PHNSSIEFLL PDGSKLEGFT KSYSGLYAFS GWEDVCQKYN  240
LKQGDTVVCE FELSGRVVTA VRVHLVSE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00484.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491315.10.0PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ680D93e-91Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A0D3CJ471e-132A0A0D3CJ47_BRAOL; Uncharacterized protein
STRINGBo5g121410.11e-133(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.31e-93B3 family protein