PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00481.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 239aa    MW: 25538 Da    PI: 8.1568
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00481.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-0595117123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ykC+ CgksFs+   L  H  +H
  Rsa1.0_00481.1_g00012.1  95 YKCTVCGKSFSSYQALGGHKTSH 117
                              9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.22E-1094117No hitNo description
Gene3DG3DSA:3.30.160.606.2E-595117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.30295122IPR007087Zinc finger, C2H2
SMARTSM003550.002895117IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-1395119IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576672.22E-10155182No hitNo description
SMARTSM003550.82160182IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349160182IPR007087Zinc finger, C2H2
PfamPF139125.7E-11160184IPR007087Zinc finger, C2H2
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MALETLNSPT SATASARPLL RYREEMEPES LEQWAKRKRT KRQRFDQNRH SQETPPSEEE  60
YLALCLLMLA RGSAVPSPLP LSQLSRPPSS DHRGYKCTVC GKSFSSYQAL GGHKTSHRKP  120
ASNVNVPGSS QEPSNNSHSN SNGGSVVISG NGVSHSGKIH TCSICFKSFS SGQALGGHKR  180
CHYDGGNNGN GNGSSSNSSV EVVGGSDVDD ERSSEQSAIG DHRGFDLNLP AEQVAVVIS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00481.1_g00012.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBRU765540.0U76554.1 Brassica rapa zinc-finger protein-1 (BR42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436874.11e-175PREDICTED: zinc finger protein AZF1-like
SwissprotQ9SSW11e-104AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A0D3AYX41e-125A0A0D3AYX4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E4I51e-125A0A3P6E4I5_BRAOL; Uncharacterized protein
STRINGBo2g168030.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.13e-86zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]