PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00479.1_g00010.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 205aa MW: 22701.5 Da PI: 7.8246

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00479.1_g00010.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.8	2.7e-18	56	106	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Rsa1.0_00479.1_g00010.1 56 STYRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTPEMAARAHDVAALAIKG 106 56***998.******854...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.38E-34	56	116	No hit	No description
SuperFamily	SSF54171	8.5E-22	56	115	IPR016177	DNA-binding domain
Pfam	PF00847	8.6E-12	57	106	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.8E-32	57	115	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.853	57	114	IPR001471	AP2/ERF domain
SMART	SM00380	8.9E-40	57	120	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-10	58	69	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-10	80	96	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MKKLKLIDHS SCRRRYQDPP GHATARTVNN NKNNHNPKKK RVVEEDNDEK IVSKHSTYRG 60 VRMRQWGKWV SEIREPKKKS RIWLGTFSTP EMAARAHDVA ALAIKGGSAH LNFPELAYHL 120 PRPASADPKD IQAAAAAAAA SVAVDMEVET SAPSPASSEP SSLGMTALVD DAFSDLPDLL 180 LDVSHNIDGF WDSYPYEEPF FSGSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-17	51	114	8	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00479.1_g00010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY842306	0.0	AY842306.1 Brassica napus transcription factor DREBIII-1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018467469.1	1e-115	PREDICTED: ethylene-responsive transcription factor ERF038-like
Swissprot	Q9ZQP3	3e-88	ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBL	Q5MAR7	1e-107	Q5MAR7_BRANA; BnaAnng37500D protein
STRING	Bra005314.1-P	1e-106	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2492	23	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35700.1	8e-83	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]