 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_00461.1_g00007.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 282aa MW: 31028.9 Da PI: 7.7679 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00461.1_g00007.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 55.7 | 8.2e-18 | 126 | 180 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tk+q Le+ F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k
Rsa1.0_00461.1_g00007.1 126 RKKLRLTKQQSALLEDSFKVHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 180
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 122.5 | 2e-39 | 126 | 215 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
+kk+rl+k+q++lLE+sF+ +++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++
Rsa1.0_00461.1_g00007.1 126 RKKLRLTKQQSALLEDSFKVHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQD 211
69************************************************************************************ PP
HD-ZIP_I/II 87 Lreel 91
L+ +l
Rsa1.0_00461.1_g00007.1 212 LK-AL 215
*9.55 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009735 | Biological Process | response to cytokinin |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MGLDDSCNTG LVLGLGLSPT PNNYSHAIKK SSPTVEHHFD PSLTLSLSGE SYKTKTVEMT 60
DAGAGDQIFR QTSSHSGISS FSSGRVKRER EVLGGDVEEE AEETTERVVC SRVSDDHEDE 120
EGVSARKKLR LTKQQSALLE DSFKVHSTLN PKQKQVLARQ LNLRPRQVEV WFQNRRARTK 180
LKQTEVDCEF LKKCCETLTD ENRRLQKELQ DLKALKMSQP FYMHMPPATL TMCPSCERLS 240
GGAAGGGGGG TVAVDGETGK GAFSIVTKPR FYSHFTNPSA AC
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 174 | 182 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ441254 | 0.0 | AJ441254.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT22. |
