PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00455.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 195aa    MW: 22726.9 Da    PI: 5.6391
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00455.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.43.2e-1385133553
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                              +++rr+++NRe+ArrsR RK+  ++eL   v  L + N+ L+++l++ +
  Rsa1.0_00455.1_g00016.1  85 RKQRRMISNRESARRSRMRKQRHLDELWSQVIRLRTDNHCLIDKLNNVS 133
                              79****************************************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.6E-1179133No hitNo description
SMARTSM003381.2E-1381145IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.92183133IPR004827Basic-leucine zipper domain
PfamPF001703.1E-1185133IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.06E-1285133No hitNo description
CDDcd147026.26E-1886133No hitNo description
PROSITE patternPS00036088103IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MNTIPEEFTG YFKYVSPEKY NNQTPIMEFE YFNMHSSPTS SSYYINGLIN NNSYYSSSSN  60
GHDLMMSNNS ASDEDHQQSM AIDERKQRRM ISNRESARRS RMRKQRHLDE LWSQVIRLRT  120
DNHCLIDKLN NVSASHELAL KENAKLKEET SDLRQLITEI KSNKEDDNSF LRELEDSISN  180
AGSGSDQTGR NFELY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197104RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00455.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0271340.0AC027134.4 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete sequence.
GenBankAF3324300.0AF332430.1 Arabidopsis thaliana clone C00105 (e) putative bZIP transcription factor (At1g13600) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF21F230.0AC027656.4 Sequence of BAC F21F23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437571.11e-143PREDICTED: basic leucine zipper 43-like
TrEMBLM4EDN51e-117M4EDN5_BRARP; Uncharacterized protein
STRINGBra026895.1-P1e-118(Brassica rapa)
STRINGBra026896.1-P1e-118(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.11e-101basic leucine-zipper 58