PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00451.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 275aa MW: 30545.9 Da PI: 10.7536 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.7 | 1e-12 | 205 | 259 | 7 | 58 |
HHCHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKka...eieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r++kNRe+A rsR+RK++ ++ eLe kv++L+aeN +Lk + ++lk +a+ Rsa1.0_00451.1_g00016.1 205 HKRMIKNRESAARSRARKQEcaaYTNELELKVAQLKAENARLKRQQDQLKMAAAN 259 69****************954449*************************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.7E-5 | 199 | 266 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.7E-10 | 203 | 256 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.4E-11 | 203 | 255 | No hit | No description |
CDD | cd14707 | 5.56E-23 | 203 | 260 | No hit | No description |
SuperFamily | SSF57959 | 5.47E-8 | 204 | 254 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 206 | 221 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MFTSAKHQRN HRVSAPNKNK TLNKVSSISS SSSPVHPQDS QSLKRSLVTM EEVWNDISLA 60 SIHHVNRQSQ HQQQNHEPRF STLNHQNQNP NSIFQDFLNR PLNQELAIPT SLTMGSSSNG 120 HSTTVTALFS SSPLAPPATV LSLNSGAGFE FLDNQDPLVT PNSNLHSYNH LTNVASLDTP 180 FEALVTSTCN KRSHESNGGS GNRHHKRMIK NRESAARSRA RKQECAAYTN ELELKVAQLK 240 AENARLKRQQ DQLKMAAANQ QPKKNTLQRS STAPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00451.1_g00016.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018449453.1 | 0.0 | PREDICTED: protein FD-like | ||||
Swissprot | Q84JK2 | 1e-129 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A1J3HBH2 | 1e-145 | A0A1J3HBH2_NOCCA; Protein FD (Fragment) | ||||
TrEMBL | A0A1J3J4V9 | 1e-144 | A0A1J3J4V9_NOCCA; Protein FD (Fragment) | ||||
STRING | XP_006412047.1 | 1e-144 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-126 | bZIP family protein |