PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00442.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 23275.9 Da PI: 10.334 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.4 | 1.3e-34 | 20 | 111 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 aCa+Ck++r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k+++ ++ee+r+++ +sl++eA +r++dPv G++g +++l+++ Rsa1.0_00442.1_g00004.1 20 ACASCKHQRKKCNNECILSPYFPARKNKEFQAVHKVFGVSNVQKMVRIVREEDRTKLSESLTWEALWRQKDPVLGSYGEYRRLSEE 105 7************************************************************************************* PP DUF260 87 leqlka 92 l+ k+ Rsa1.0_00442.1_g00004.1 106 LKLYKS 111 998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.518 | 19 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-32 | 20 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MMQRNSNNSN ISSNSPPHQA CASCKHQRKK CNNECILSPY FPARKNKEFQ AVHKVFGVSN 60 VQKMVRIVRE EDRTKLSESL TWEALWRQKD PVLGSYGEYR RLSEELKLYK SVVHNQPLVT 120 WNSSNNQQRV FNNSNNNKNG LAVNSSDSGG FSVVNNNGVG VNREIINGGY TSRNLQGGWG 180 NLKQDQRQQY YAVINGFKQH HPPH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-17 | 21 | 106 | 12 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-17 | 21 | 106 | 12 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00442.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490366.1 | 1e-151 | PREDICTED: LOB domain-containing protein 2-like | ||||
Swissprot | Q9LNB9 | 1e-106 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | V4MVQ1 | 1e-112 | V4MVQ1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417938.1 | 1e-113 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10539 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-87 | LOB domain-containing protein 2 |