PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 133aa MW: 14830.1 Da PI: 5.7899

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00438.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.3	5.3e-20	16	66	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrd ++ g r++lg+f+tae+Aa+a+++a+ +++g Rsa1.0_00438.1_g00007.1 16 KFRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEDAARAYDRAAYSMRG 66 79*****.******65443..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.35E-17	16	75	No hit	No description
PROSITE profile	PS51032	23.459	16	74	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.35E-23	16	76	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	9.8E-32	16	76	IPR001471	AP2/ERF domain
SMART	SM00380	4.3E-35	16	80	IPR001471	AP2/ERF domain
Pfam	PF00847	3.3E-14	16	66	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-11	17	28	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-11	40	56	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MDQGSRSGGE GAEQGKFRGV RRRPWGKYAA EIRDSRKHGE RVWLGTFDTA EDAARAYDRA 60 AYSMRGQAAI LNFPHEYNMG SGSSSNSAAT AATSSSSRQV FEFEYLDDSV LDELLEYGEN 120 YNKINNINMG NRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-55	1	110	1	114	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:11950980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00438.1_g00007.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains). Not affected by methyl jasmonate (MeJA), ethylene or salicylic acid (SA). {ECO:0000269\|PubMed:11950980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232437	1e-178	AC232437.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018490322.1	3e-94	PREDICTED: ethylene-responsive transcription factor 14-like
Swissprot	P93822	1e-59	ERF97_ARATH; Ethylene-responsive transcription factor 14
TrEMBL	A0A078IT59	7e-65	A0A078IT59_BRANA; BnaAnng12120D protein
STRING	Bra032512.1-P	5e-63	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04370.1	2e-44	Ethylene-responsive element binding factor 14