PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00434.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 443aa    MW: 48327.8 Da    PI: 9.9993
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00434.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05198219323
                              ETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                              C+ Cg++F+  ++L+ H+ + H
  Rsa1.0_00434.1_g00014.1 198 CSQCGEVFTKLESLELHQAVrH 219
                              ******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.432196224IPR007087Zinc finger, C2H2
PROSITE patternPS000280198219IPR007087Zinc finger, C2H2
SuperFamilySSF563998.63E-23221439No hitNo description
Gene3DG3DSA:3.90.228.109.7E-16223440IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MALPTLLPEN SEPPKHTPPQ TKRKKRENRT DQTKKPHKPH KQKAVASQKQ PSSWDQIKNL  60
LTCKQIEGSR IHDPSRNSQP GPPTTTHLLS PSKLGSSCSS ICRFRDVAHG NTRVVHRADH  120
SPDVANSATP NSETRLLTRK PGQHGSSSSS RSLTYGSTTS SATTSFKAMQ FRKLSGCYEC  180
HMIVDPSRYP ISPRVRACSQ CGEVFTKLES LELHQAVRHA VSELGPEDSG RNIVEIIFKS  240
SWLKKDSPIC KIERILKVHN TQRTIQRFED CRDAVKARAL QTTRKDARCA ADGNELLRFH  300
CTTLACSLGS RGSSSLCSNL PSCGVCNVIR HGFQGRSGAG GANAAVSGGL RTTASSGRAD  360
DLLRCSDDTR RVMLVCRVIA GSVKRVDSTA EVKKAPVEDN SSGGVFDSVA VNAGVYSNLE  420
ELVVYNPRAI LPCFVVIYKV VES
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00434.1_g00014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529750.0AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470540.10.0PREDICTED: uncharacterized protein LOC108842198 isoform X1
RefseqXP_018470541.10.0PREDICTED: uncharacterized protein LOC108842198 isoform X2
TrEMBLA0A3N6RY120.0A0A3N6RY12_BRACR; Uncharacterized protein
STRINGBo2g085310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein