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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00427.1_g00016.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
SRS |
Protein Properties |
Length: 237aa MW: 26691.5 Da PI: 9.3563 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00427.1_g00016.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 196.3 | 9.6e-61 | 7 | 148 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90
+ +C+dCGnqakk+C+++RCRtCCks++f+C+th+kstWvpa++r+ + +q +++++ ++++ ++ ++kr re+ + +s+ ss+
Rsa1.0_00427.1_g00016.1 7 GRRCEDCGNQAKKECVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSRK-HQSQTQTQPQQQQLSTTNPKRLREQ--HPTSSPSSSG 89
569***************************************987665.5555556666677788888888876..4444444444 PP
DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+ ++t +P e+ss a frcv+vss+ddg+e++aYqt+v+igGhvfkGiL+dqGle+
Rsa1.0_00427.1_g00016.1 90 VR-----IGTSTGYFPVELSSVADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFKGILHDQGLEK 148
44.....4456688***********************************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MMMMLTGRRC EDCGNQAKKE CVYMRCRTCC KSKAFHCQTH IKSTWVPAYR RSRKHQSQTQ 60 TQPQQQQLST TNPKRLREQH PTSSPSSSGV RIGTSTGYFP VELSSVADFR CVKVSSIDDG 120 KEQYAYQTTV NIGGHVFKGI LHDQGLEKVV LDHQPAHHDQ ALLIPSSSSS CPLMITSPFT 180 DFMSGTHTKS FSELDAGRRR NFVVIRLLLW EGRNVKKGGE LMDVDLVMLM ESSRMGS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC006841 | 6e-59 | AC006841.7 Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence. |
GenBank | CP002685 | 6e-59 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |