PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00422.1_g00011.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 284aa MW: 31491.4 Da PI: 9.6248

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00422.1_g00011.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.3	5.3e-16	213	255	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 ++++r++kNRe+A rsR+RK+a+++eLe kv LeaeN++L+ Rsa1.0_00422.1_g00011.1 213 RKQKRMIKNRESAARSRARKQAYTQELEIKVSRLEAENERLRR 255 689**************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.9E-14	206	256	No hit	No description
SMART	SM00338	7.6E-13	209	282	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.369	211	256	IPR004827	Basic-leucine zipper domain
CDD	cd14707	5.40E-21	213	267	No hit	No description
SuperFamily	SSF57959	1.31E-10	213	258	No hit	No description
Pfam	PF00170	1.9E-12	213	256	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	216	231	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDSEREPKSQ SLNRQGSLYS LTLDEVQTHL AGSGKALGSM NLDELLKSVC SVEANQQQQQ 60 QQEDLSLSRQ GSLTLPRDLS KKTVEEVWKD IQHNNTNGSN AQERRDNNKQ ATLGDMTLED 120 LLLKAGVVTE TVTGGGGGLG ENNIPQAAGP WVQYHQLPSM MPQGQSFMPY PPVGDMQGAM 180 VSQSSLLMGG DTQTTPGRKR VASGEVVEKT VERKQKRMIK NRESAARSRA RKQAYTQELE 240 IKVSRLEAEN ERLRRQKEVE KILPSAPPPD PKRQQLRRTS SAPF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00422.1_g00011.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018458583.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-137	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A3P6C8Y7	1e-144	A0A3P6C8Y7_BRACM; Uncharacterized protein
STRING	Bra007274.1-P	1e-143	(Brassica rapa)
STRING	Bra007276.1-P	1e-143	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-132	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]