PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00418.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 801aa MW: 88934.6 Da PI: 7.9117 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.7 | 1.6e-10 | 644 | 703 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR++A rs +RK +++eLe kv +L+ eN aL + +l ++ l++++ Rsa1.0_00418.1_g00016.1 644 PKRVKRILANRLSAARSKERKMLYTAELEHKVHTLQRENAALSAHVTHLHGHSTGLQNQN 703 5999*****************************************999998887777766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.0095 | 267 | 331 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.4E-5 | 268 | 344 | No hit | No description |
SMART | SM00338 | 1.3E-14 | 641 | 705 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.277 | 643 | 706 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 4.0E-10 | 643 | 691 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.58E-10 | 645 | 700 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-11 | 645 | 693 | No hit | No description |
CDD | cd14703 | 1.82E-19 | 646 | 692 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 801 aa Download sequence Send to blast |
MNRQAETAPF VLSTQFPCPP PPPNGQKRGN MPPPRRSSLP PLPPKRPTTT RQQTEFQNFN 60 PGPRLPPQSP VFGSLPPIMS PAPPSWSSYQ GFQSAPPVAY HNQALPQLPF TGPPTPSVSA 120 HRRASYGDNN SAGFPSMDAM NMIYPEPMEM PVGVNYSNQG HGDKEFGIGE PSGFMDEYVT 180 AYPDLDNIFD FSIKNDDVER ITSGSSKNKR KATTSSDVSP SRSVRRKSVD CNNLNNGSSS 240 IGIGNWMFTE SQMDEIARCD TLKKLVSTDP KSVKRILTNR ETSRRTQERK AQQVLDLEEM 300 VETLEKEVCT VAAHTSIAER TKLGLEEDNK QMRIRIQEME EQAKVANEGN RRGNPKQGDD 360 NGRRHVGATE TVRGADDRLL WFRMKRSSIL SKEVERVVEL YFFRDMMMRP NSSSSSSVPN 420 QHLNRVPLPY TGDRVGAPSP IPPATLPPNH SMPAMEEITV AGFSPYLPPS PFTMYHPTSR 480 MVAGGENILP PPGKSHMRSN SDDVTFGFSS MMPQPLNSLP PLVPSKPLER SISGGREVSA 540 FRGRTSESEY DIIRAYMEEE MESGRGTTRK KTNGGSGGEG IASPACGHYR SVSLDSCFLG 600 RPSSNSGEGE GAYSVEFGDC EFSPDEIERI TADEKLAEIV VAEPKRVKRI LANRLSAARS 660 KERKMLYTAE LEHKVHTLQR ENAALSAHVT HLHGHSTGLQ NQNSELRFRL QAMEQQAHLR 720 NALSEKLTEE VQRLRLFIGV PSGSESNISK TSLNPEMFEQ QLRISQLQHQ HSNQNNSTMN 780 ANPASNGYFS QLSDDPQFRH I |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00418.1_g00016.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189480 | 5e-47 | AC189480.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB082F21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018436220.1 | 0.0 | PREDICTED: transcription factor VIP1-like | ||||
TrEMBL | A0A0D3DW91 | 1e-118 | A0A0D3DW91_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g101920.1 | 1e-119 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20354 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G21230.1 | 3e-85 | bZIP family protein |