PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00411.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 325aa    MW: 36585.4 Da    PI: 8.092
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00411.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.8e-36151052101
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+++++e+++++++isw+e+g+sfvv+++++fak++Lpk+Fkhsnf+SFvRQLn+YgFkkv  ++         weF+++sF+
  Rsa1.0_00411.1_g00016.1  15 FLTKTFNLVEEPSINDVISWNEDGSSFVVWNPTDFAKDLLPKHFKHSNFSSFVRQLNTYGFKKVVPDR---------WEFSNDSFR 91 
                              9*****************************************************************99.........********* PP

                              XXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkk 101
                              +g+k+ll++i+r+k
  Rsa1.0_00411.1_g00016.1  92 RGEKRLLRDIQRRK 105
                              ************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.1E-5511104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.6E-3411104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-3713104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-181538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-185365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MMSNGESQRT ALTPFLTKTF NLVEEPSIND VISWNEDGSS FVVWNPTDFA KDLLPKHFKH  60
SNFSSFVRQL NTYGFKKVVP DRWEFSNDSF RRGEKRLLRD IQRRKLNPHH QAAVSPPPQQ  120
PEKAVVSPSS SSGEDQTMSP SSSLSVELLE ENERLRSQNI QLNRDLTQMK SLYGNIFTLM  180
STYAGSSSSQ HVEVEEEASP RLFGVSIGLK RTRSEGAAKT AAIGGGETPW LRHYNLLANQ  240
RVCLNLALQS LEPLTDDNLR VTTGEGDPVS FCVMAFIFLR AAKTGQRKVV DLEEVEVAQV  300
LSETKRNIAS VECIFMWKKQ MNRGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-22510419129Heat shock factor protein 1
5d5v_B2e-22510419129Heat shock factor protein 1
5d5v_D2e-22510419129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00411.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439791.10.0PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ9SCW41e-109HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLM4EKH41e-128M4EKH4_BRARP; Uncharacterized protein
STRINGBra029291.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-93heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]