PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C3H

Protein Properties

Length: 351aa MW: 39562.2 Da PI: 6.5009

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00410.1_g00016.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.1	1.5e-08	124	145	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+++G C+ Gd+C FaHg Rsa1.0_00410.1_g00016.1 124 ACPEFRKGGGCNKGDSCEFAHG 145 7********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.7E-5	119	146	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.737	119	147	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-5	120	149	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.7E-6	124	145	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.4E-5	124	147	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.8E-4	152	182	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3	155	178	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.582	155	179	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MIGETREPYP TVQIPTWPVS EYLTSSEIFS PAMNSPDFST LEALTALHRY LPSNEPDPDS 60 DPEPPFGPDS PVDAYSSDRF RMYDFKVLRC ARGRSHDWTE CPYVHPGEKA RRRDPTKCSY 120 SGTACPEFRK GGGCNKGDSC EFAHGVFECW LHPSRYRTQP CKDGGGCRRK VCFFAHSPEQ 180 LRYVQARSPD RVDSCFRAFQ LSVSPVSSSP PVSPRADSEC SQSLSRSLGS SYINEVTTSF 240 RNLQFERLKS FPPYYSNPFR CYQSGFGSPR GSMLGPGFQS LPTTPTRPGN LDIWESGLEE 300 EPAMERVVDS GRELRAKMFE KLSKENCMDR VKPDQNSGEA PDVRWVSELV M

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MIGETREPYP TVQIPTWPVS EYLTSSEIFS PAMNSPDFST LEALTALHRY LPSNEPDPDS  60
DPEPPFGPDS PVDAYSSDRF RMYDFKVLRC ARGRSHDWTE CPYVHPGEKA RRRDPTKCSY  120
SGTACPEFRK GGGCNKGDSC EFAHGVFECW LHPSRYRTQP CKDGGGCRRK VCFFAHSPEQ  180
LRYVQARSPD RVDSCFRAFQ LSVSPVSSSP PVSPRADSEC SQSLSRSLGS SYINEVTTSF  240
RNLQFERLKS FPPYYSNPFR CYQSGFGSPR GSMLGPGFQS LPTTPTRPGN LDIWESGLEE  300
EPAMERVVDS GRELRAKMFE KLSKENCMDR VKPDQNSGEA PDVRWVSELV M

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00410.1_g00016.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018448025.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 49-like
Swissprot	Q9M0G2	0.0	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	M4D1I4	0.0	M4D1I4_BRARP; Uncharacterized protein
STRING	Bra010334.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1249	27	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	1e-158	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]