PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00387.1_g00044.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 316aa    MW: 35607.5 Da    PI: 5.0201
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00387.1_g00044.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.58.8e-56201461129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              l pGfrFhPtdeel+++yLk+kv ++ +++  +i evd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nratk+gyWkat
  Rsa1.0_00387.1_g00044.1  20 LLPGFRFHPTDEELISHYLKPKVLNTLFSA-IAIGEVDLNKVEPWDLPWKAKIGEKEWYFFCVRDRKYPTGLRTNRATKAGYWKAT 104
                              579************************999.88***************98999********************************* PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              gkdke+++ +++lvg+kktLvfy+grapkg kt+Wvmheyrle
  Rsa1.0_00387.1_g00044.1 105 GKDKEIFR-EKALVGMKKTLVFYEGRAPKGAKTNWVMHEYRLE 146
                              ********.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6017170IPR003441NAC domain
PROSITE profilePS5100557.13620170IPR003441NAC domain
PfamPF023656.3E-3022145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDYEVSRICE IVEDSEQIDL LPGFRFHPTD EELISHYLKP KVLNTLFSAI AIGEVDLNKV  60
EPWDLPWKAK IGEKEWYFFC VRDRKYPTGL RTNRATKAGY WKATGKDKEI FREKALVGMK  120
KTLVFYEGRA PKGAKTNWVM HEYRLEGIYS TDNLPKTAKN EWVISRVFQK GADGKKMHLY  180
QGLGSGINQV EPAGLPPLMD SSFAGSLSNV TCFSDQTTVE DKSHISELKD ECNLTMLGSS  240
STDLIPNIGS LLYSDPLFMQ DNSSIVKMLL DGEETKFKKS IQDFGTVENA LTTSSWDCDG  300
LAGSAGLVEV DCYWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-531717614171NO APICAL MERISTEM PROTEIN
1ut4_B4e-531717614171NO APICAL MERISTEM PROTEIN
1ut7_A4e-531717614171NO APICAL MERISTEM PROTEIN
1ut7_B4e-531717614171NO APICAL MERISTEM PROTEIN
3swm_A5e-531717617174NAC domain-containing protein 19
3swm_B5e-531717617174NAC domain-containing protein 19
3swm_C5e-531717617174NAC domain-containing protein 19
3swm_D5e-531717617174NAC domain-containing protein 19
3swp_A5e-531717617174NAC domain-containing protein 19
3swp_B5e-531717617174NAC domain-containing protein 19
3swp_C5e-531717617174NAC domain-containing protein 19
3swp_D5e-531717617174NAC domain-containing protein 19
4dul_A4e-531717614171NAC domain-containing protein 19
4dul_B4e-531717614171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00387.1_g00044.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382720.0KF738272.1 Brassica napus NAC transcription factor 59 (NAC59.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482683.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9LJW31e-151NAC59_ARATH; NAC domain-containing protein 59
TrEMBLA0A397Z6U60.0A0A397Z6U6_BRACM; Uncharacterized protein
STRINGBo7g087220.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.11e-154NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]