PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 138aa MW: 16141.8 Da PI: 10.3751

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00387.1_g00041.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.4	1.1e-15	14	59	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W Ed l ++v+ +G+ +W+ Ia++m+ gRt+k+c++rw++ Rsa1.0_00387.1_g00041.1 14 RGHWRISEDSHLMELVAVYGPQNWNHIAEKMQ-GRTGKSCRLRWFNQ 59 789999************************.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.835	9	64	IPR017930	Myb domain
SMART	SM00717	1.0E-9	13	62	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-15	14	59	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.83E-22	14	104	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-24	15	67	IPR009057	Homeodomain-like
CDD	cd00167	1.40E-9	17	58	No hit	No description
PROSITE profile	PS50090	3.961	61	105	IPR017877	Myb-like domain
SMART	SM00717	7.1	65	114	IPR001005	SANT/Myb domain
CDD	cd00167	0.0043	68	100	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.9E-10	68	104	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MNQKEEACFR VCSRGHWRIS EDSHLMELVA VYGPQNWNHI AEKMQGRTGK SCRLRWFNQL 60 DPRINKRAFN LEEEERLLAA HRGFGHKCAM IAKLFNGRTD DAFKEPQAYV LMARKLRKLI 120 KNLSTPAIII KVPVSDRY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	7e-23	14	104	4	94	MYB PROTO-ONCOGENE PROTEIN
1h88_C	3e-22	14	104	58	148	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-22	14	104	58	148	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	2e-22	13	104	26	117	MYB TRANSFORMING PROTEIN
1mse_C	7e-23	14	104	4	94	C-Myb DNA-Binding Domain
1msf_C	7e-23	14	104	4	94	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269\|PubMed:19542355}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00387.1_g00041.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478826.1	6e-96	PREDICTED: transcription factor MYB44-like
Swissprot	Q9SEZ4	2e-49	MY105_ARATH; Transcription factor MYB105
TrEMBL	A0A087GV70	3e-60	A0A087GV70_ARAAL; Uncharacterized protein
TrEMBL	R0FTE6	5e-60	R0FTE6_9BRAS; Uncharacterized protein
STRING	A0A087GV70	6e-61	(Arabis alpina)
STRING	XP_006292843.1	8e-61	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6300	18	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29020.1	3e-51	myb domain protein 110

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]