PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00385.1_g00023.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 716aa MW: 78115.4 Da PI: 6.8012

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00385.1_g00023.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.4	0.00062	553	590	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq Rsa1.0_00385.1_g00023.1 553 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 590 67799************55......5566667777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	9.5E-31	35	191	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	9.93E-4	535	591	No hit	No description
PROSITE profile	PS50888	11.28	540	589	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-4	553	601	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-5	553	596	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence Send to blast
MGNRQISQDE VGPPINPRAG LRREQAGRGS YRGKILRSLC SNTDWKYAVF WKLNQRSRMV 60 LTMGDAYYDN NHGHSNSPEV QGCSVIPKDM HAGAHDSLGL AVAKMAYHVY SLGEGIVGQV 120 AVSGEHQWVF PEYNGNCHSA SEFHNVWESQ IYAGVKTILV VAVGPCGVVQ LGSLLKVDED 180 VTLVNHIRHM FLAMADHAAG LMQCNMNNSL CLPNIPSEGL HVESYPNCSG EVGKAIDVKE 240 LTQYKLIRSD SMPYNTPPSC LLAEKAAQVV QGSSCGSYSS VTFGFPIDLV DATRHENQVG 300 TNIVSGAPHV GMTSGCKDPN LHEHVMKNHV LNNNTSSSAL ATEAERLISG QSYTCLDSSS 360 YQNEVFRLEG KCESSRRLDA LISSGYPFAG SELLEALGSG FKQTSRGGHE ELVKSEHAST 420 TGPTCDTSHS QLTFDPGPEN LLDAVVANVC HSDGNARDEI LSSRSVHSLL TSMAEPSGQK 480 VHSVAMMKQL PLAEVVDTQQ TPSDICGAFS SIGFSSTCPS SSSDQFQTSL EMPKKIKKRA 540 KPGESSRPRP RDRQLIQDRI KELRELVPNG SKCSIDSLLE RTIKHMLFLQ NVTKHADKLS 600 KSASAKMQQK ESGTQGSSCA VEVGGHLQVC SIIVENLNKQ GMVLIEMLCE ECSHFLEIAN 660 VIRSLDLIIL RGVTEAQGEK TWICFVVESQ NNKVMQRMDI LWSLVQIFQP KANGKH

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence Send to blast

MGNRQISQDE VGPPINPRAG LRREQAGRGS YRGKILRSLC SNTDWKYAVF WKLNQRSRMV  60
LTMGDAYYDN NHGHSNSPEV QGCSVIPKDM HAGAHDSLGL AVAKMAYHVY SLGEGIVGQV  120
AVSGEHQWVF PEYNGNCHSA SEFHNVWESQ IYAGVKTILV VAVGPCGVVQ LGSLLKVDED  180
VTLVNHIRHM FLAMADHAAG LMQCNMNNSL CLPNIPSEGL HVESYPNCSG EVGKAIDVKE  240
LTQYKLIRSD SMPYNTPPSC LLAEKAAQVV QGSSCGSYSS VTFGFPIDLV DATRHENQVG  300
TNIVSGAPHV GMTSGCKDPN LHEHVMKNHV LNNNTSSSAL ATEAERLISG QSYTCLDSSS  360
YQNEVFRLEG KCESSRRLDA LISSGYPFAG SELLEALGSG FKQTSRGGHE ELVKSEHAST  420
TGPTCDTSHS QLTFDPGPEN LLDAVVANVC HSDGNARDEI LSSRSVHSLL TSMAEPSGQK  480
VHSVAMMKQL PLAEVVDTQQ TPSDICGAFS SIGFSSTCPS SSSDQFQTSL EMPKKIKKRA  540
KPGESSRPRP RDRQLIQDRI KELRELVPNG SKCSIDSLLE RTIKHMLFLQ NVTKHADKLS  600
KSASAKMQQK ESGTQGSSCA VEVGGHLQVC SIIVENLNKQ GMVLIEMLCE ECSHFLEIAN  660
VIRSLDLIIL RGVTEAQGEK TWICFVVESQ NNKVMQRMDI LWSLVQIFQP KANGKH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00385.1_g00023.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352985	0.0	AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018483903.1	0.0	PREDICTED: transcription factor bHLH155-like
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	A0A0D3C3E3	0.0	A0A0D3C3E3_BRAOL; Uncharacterized protein
STRING	Bo4g176150.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]