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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Rsa1.0_00383.1_g00025.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
LBD |
| Protein Properties |
Length: 238aa MW: 26170.5 Da PI: 8.0483 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00383.1_g00025.1 | genome | RGD | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 92.1 | 6.5e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81
+C++C+vlr++C++ +l+p++ +++q +++ +++k+FG++ ++++++++pe++r+++++sl+yeA+ r+ +Pv+Gavg+++
Rsa1.0_00383.1_g00025.1 2 SCNGCRVLRKGCSETSILRPCIqwiesAESQGHATVFLAKFFGRAGLTSFISSVPESQRPALFQSLLYEACGRTVNPVNGAVGLLW 87
6*********************9999777889****************************************************** PP
DUF260 82 klqqqleqlkaelall 97
++++ ++q+++e++l+
Rsa1.0_00383.1_g00025.1 88 TGNWSICQAAVETVLR 103
**********999876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSETSILR PCIQWIESAE SQGHATVFLA KFFGRAGLTS FISSVPESQR 60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WSICQAAVET VLRGGSLRPI PELLTRDGGF 120
PSPTSDEASE ICTEMMNDSG DRSIYHHSRF SSSRSRSTAS PPKRRRLASE QQRPEIDFSL 180
TPAFPTKTTP FKEETRRPET PSLYSEESVI TAPFQDNIAS ERFVRGGGET AKLLNLFA
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