PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00364.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 156aa MW: 17684.7 Da PI: 6.6185 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.7 | 3.2e-10 | 58 | 102 | 6 | 50 |
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + rr NReA r++R++Kka+++ Le++vk L++ N+ L +l+ Rsa1.0_00364.1_g00004.1 58 NKRRSCGNREAVRKYREKKKARTAYLEDEVKRLKSMNEFLLRKLQ 102 5788899*******************************9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-6 | 52 | 120 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 1.8E-14 | 55 | 102 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.864 | 55 | 121 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.52E-7 | 57 | 103 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-11 | 58 | 121 | No hit | No description |
CDD | cd14686 | 1.14E-9 | 65 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MDEEEVEAWA RASGGCSHTH SCNPPGPENA SHSHTCFHTH THLIIPDSQE NGYSDGSNKR 60 RSCGNREAVR KYREKKKART AYLEDEVKRL KSMNEFLLRK LQSQAIVEAE IIRLRTLLAE 120 MQGTIDDELG GFSFQKQCNG SDFVFKEGDV SFCLVY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of salt stress response. Functions as a negative transcriptional regulator of salt stress acclimation response by regulating cation homeostasis (PubMed:18703123, PubMed:19248824). Regulates negatively the expression of genes contributing to ion and osmotic homeostasis during salt stress, such as the Na(+) transporter HKT1, the Na(+)/H(+) antiporter SOS1, the aquaporin PIP2-1 and the glutamine synthetase GLN1-3. In addition, targets genes with functions in plant growth and development, such as argonaute 4 (AGO4) and cyclophilin 19 (CYP19) (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00364.1_g00004.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18703123, PubMed:19248824). Induced by osmotic stress (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480324.1 | 1e-107 | PREDICTED: basic leucine zipper 24-like | ||||
Refseq | XP_018480326.1 | 1e-107 | PREDICTED: basic leucine zipper 24-like | ||||
Refseq | XP_018480328.1 | 1e-107 | PREDICTED: basic leucine zipper 24-like | ||||
Refseq | XP_018480329.1 | 1e-107 | PREDICTED: basic leucine zipper 24-like | ||||
Swissprot | Q8GTS1 | 4e-77 | BZP24_ARATH; Basic leucine zipper 24 | ||||
TrEMBL | A0A0D3BYL5 | 1e-106 | A0A0D3BYL5_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g125710.1 | 1e-107 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15172 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51960.1 | 6e-68 | basic leucine zipper 24 |