PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00362.1_g00029.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 595aa    MW: 67854.5 Da    PI: 7.1589
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00362.1_g00029.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.23.3e-1699180286
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdql 85 
                              W+ +evlaL+++r+ +e+++ +       We+ s+k++e gf+rsp++Ckek+e+ ++ry + +++ + +  ++ ++ ++++f+++
  Rsa1.0_00362.1_g00029.1  99 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNSNNNTNAHhmSNYNKGNYRLFSEV 179
                              ********************998.....9*****************************9999988877773446666678888776 PP

                 trihelix  86 e 86 
                              +
  Rsa1.0_00362.1_g00029.1 180 D 180
                              5 PP
2trihelix99.33.2e-31447539186
                 trihelix   1 rWtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                              rW+++evlaLi++rr++ +           ++ +  plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+t
  Rsa1.0_00362.1_g00029.1 447 RWPRDEVLALINIRRSISSMNDdiplpspsSSTKVVPLWERISKKMLEIGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRT 531
                              8**************655444411133322346889******************************************8.9***** PP

                 trihelix  79 cpyfdqle 86 
                              cpyf+ql+
  Rsa1.0_00362.1_g00029.1 532 CPYFHQLT 539
                              ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-1197163No hitNo description
PROSITE profilePS500905.48298150IPR017877Myb-like domain
CDDcd122038.33E-26446519No hitNo description
PfamPF138372.7E-19446540No hitNo description
PROSITE profilePS500907.015447512IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MFDGGVPEQI HRFIASAQPP PPLHPHQPAA ERSLPFPASF ATFSTDHQAN MLNLDGPKII  60
HHHHHHHHHG IKDSGATSEW MGHTDHDGDN HRHHHHHPWC SDEVLALLRF RSTVENWFPE  120
FTWEHTSRKL AEVGFKRSPQ ECKEKFEEEE RRYFNSNNNT NAHHMSNYNK GNYRLFSEVD  180
EFYHHGHADE EHVVSSEVGD NQNKRNSSLE GKGNVEETGQ DLLEDKTDHQ DQCQVDESSM  240
GNKLNSIVNV VEVGNVEDDA KSSSSASLMM IMRDNKKRKR KKKKERFGVL KGFCEGLVRN  300
VIAQQEEMHK NLLEDMMKKE GEKIAREEAW KKQEMERLNG EVEIRAQEQA MASDRNTSII  360
KFISKFTDHN NHDDGNNKVQ SPNPSQDSSS LVLSNPQGSR KCQTSSSLQT LTPQNPSLEP  420
TSPKTLKTKI HNPKPPKGDE QGDIGKRWPR DEVLALINIR RSISSMNDDI PLPSPSSSTK  480
VVPLWERISK KMLEIGYKRS AKRCKEKWEN INKYFRKTKD VNKKRPLDSR TCPYFHQLTA  540
LYSQLSTGTT TTVTADTSVE EIVTRPEENR VGSGDPDIPT ALHVDGVGEK SNVPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280KKRKRK
2275282KKRKRKKK
3275283KKRKRKKKK
4276284KRKRKKKKE
5277281RKRKK
6277283RKRKKKK
7277284RKRKKKKE
8279284RKKKKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00362.1_g00029.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477420.10.0PREDICTED: trihelix transcription factor GTL2
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A078IRA50.0A0A078IRA5_BRANA; BnaC07g49430D protein
STRINGBo7g093250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]