PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00362.1_g00018.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 343aa MW: 38010.6 Da PI: 10.2557

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00362.1_g00018.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.4	9.2e-31	276	333	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeHnh Rsa1.0_00362.1_g00018.1 276 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDETSMLIVTYEGEHNHA 333 9***********************988**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.8E-15	235	272	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	4.1E-33	262	333	IPR003657	WRKY domain
PROSITE profile	PS50811	29.333	269	335	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-26	272	333	IPR003657	WRKY domain
SMART	SM00774	5.5E-37	274	334	IPR003657	WRKY domain
Pfam	PF03106	1.9E-26	276	332	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MEEVEAANKA AVESCHGVLN LLSQQTNDPK SLMVETREAV IKFKRVTSLL TRGLGGQRKI 60 KKLNNNNLYK FMSPLLPQHI YLESPVCSNS AITGSIPVLA PKPLQIVPPA APSYGEQRPA 120 HPPPMMLHKK MCVDKSFLEL KPPSLRAVDQ KPYQFVRNHQ QGVYYRSNSG LNLKFHGSGG 180 GSCYSPSVSN GSRSFVSSLS MDGSVTDYDR NSFHLIGLPP QGSDHISQHS RRTSCSGSLK 240 CGSKSKCHCS KKRKLRVKRS IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC 300 SSVRGCPARK HVERCVDETS MLIVTYEGEH NHARMLSSQS AHT

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MEEVEAANKA AVESCHGVLN LLSQQTNDPK SLMVETREAV IKFKRVTSLL TRGLGGQRKI  60
KKLNNNNLYK FMSPLLPQHI YLESPVCSNS AITGSIPVLA PKPLQIVPPA APSYGEQRPA  120
HPPPMMLHKK MCVDKSFLEL KPPSLRAVDQ KPYQFVRNHQ QGVYYRSNSG LNLKFHGSGG  180
GSCYSPSVSN GSRSFVSSLS MDGSVTDYDR NSFHLIGLPP QGSDHISQHS RRTSCSGSLK  240
CGSKSKCHCS KKRKLRVKRS IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC  300
SSVRGCPARK HVERCVDETS MLIVTYEGEH NHARMLSSQS AHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	267	332	7	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00362.1_g00018.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430053	0.0	KF430053.1 Brassica rapa WRKY transcription factor 39 (WRKY39) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477368.1	0.0	PREDICTED: probable WRKY transcription factor 74
Refseq	XP_018477369.1	0.0	PREDICTED: probable WRKY transcription factor 74
Swissprot	Q93WU6	0.0	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A078IHR2	0.0	A0A078IHR2_BRANA; BnaC07g27510D protein
STRING	Bra010005.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	1e-161	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]