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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00362.1_g00018.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 343aa MW: 38010.6 Da PI: 10.2557 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00362.1_g00018.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 97.4 | 9.2e-31 | 276 | 333 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeHnh
Rsa1.0_00362.1_g00018.1 276 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDETSMLIVTYEGEHNHA 333
9*************************988****************************6 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0005516 | Molecular Function | calmodulin binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MEEVEAANKA AVESCHGVLN LLSQQTNDPK SLMVETREAV IKFKRVTSLL TRGLGGQRKI 60 KKLNNNNLYK FMSPLLPQHI YLESPVCSNS AITGSIPVLA PKPLQIVPPA APSYGEQRPA 120 HPPPMMLHKK MCVDKSFLEL KPPSLRAVDQ KPYQFVRNHQ QGVYYRSNSG LNLKFHGSGG 180 GSCYSPSVSN GSRSFVSSLS MDGSVTDYDR NSFHLIGLPP QGSDHISQHS RRTSCSGSLK 240 CGSKSKCHCS KKRKLRVKRS IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC 300 SSVRGCPARK HVERCVDETS MLIVTYEGEH NHARMLSSQS AHT
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF430053 | 0.0 | KF430053.1 Brassica rapa WRKY transcription factor 39 (WRKY39) mRNA, complete cds. |