PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00362.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 322aa MW: 36633.9 Da PI: 6.9269 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.7e-17 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l +++ lG g+W++ ar+ g++Rt+k+c++rw++yl Rsa1.0_00362.1_g00014.1 28 RGPWTVEEDFKLSNYISTLGEGRWNSLARCAGLKRTGKSCRLRWLNYL 75 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.8e-16 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Rsa1.0_00362.1_g00014.1 81 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 124 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.673 | 23 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.86E-30 | 25 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-14 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-15 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.24E-11 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 22.917 | 76 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-15 | 81 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 83 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.60E-7 | 101 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDGKRRLGIN KNMGDLQNNV DDEMDLRRGP WTVEEDFKLS NYISTLGEGR WNSLARCAGL 60 KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN 120 YWRTRVQKHA KQLRCDVNSQ QFKDTMRYLW MPRLVERIQA ASASSTTGSA AKSCVATTTD 180 QLVITSYDEG ANNNNTNIDH LGLTSNPNGY VSNVSRETSS LKVSPGSGLT DYHMGSEVEK 240 VETSQNLVGP QIMSPSQNYL DDKSGLLNGV LAVMQEESYP NLFENMNGMI PSYSDSFWNI 300 GSDEDFWLLQ QQQQQLLNNG SF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-25 | 25 | 122 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00362.1_g00014.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM975657 | 0.0 | KM975657.1 Brassica napus MYB transcription factor 78-2.1 (MYB78-2.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481208.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9FGY3 | 1e-142 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A142BX59 | 0.0 | A0A142BX59_BRANA; MYB transcription factor 78-3 | ||||
TrEMBL | A0A3P5YXX9 | 0.0 | A0A3P5YXX9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D0M3 | 0.0 | M4D0M3_BRARP; Uncharacterized protein | ||||
STRING | Bra010021.1-P | 0.0 | (Brassica rapa) | ||||
STRING | Bra010022.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-133 | myb domain protein 78 |
Publications ? help Back to Top | |||
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