PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00351.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 329aa    MW: 37415.9 Da    PI: 8.3102
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00351.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.15e-30113169258
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                              dDgy+WrKYGqK++k s++prsY++Ct + C++kk+vers +dp++ +itYeg H h
  Rsa1.0_00351.1_g00011.1 113 DDGYKWRKYGQKSIKHSPNPRSYFKCTNSICNAKKQVERSIDDPNTYIITYEGFHLH 169
                              8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-28106169IPR003657WRKY domain
PROSITE profilePS5081126.314107169IPR003657WRKY domain
SuperFamilySSF1182903.27E-25110169IPR003657WRKY domain
SMARTSM007742.0E-34112171IPR003657WRKY domain
PfamPF031061.6E-24113169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAEEEDSGWK TSYGSHALDE LFVNEPHLLF LPQEQHLRLM PKENSIINKL VSSNFDSGPR  60
LQDIANAVAM VEPLTHPVRQ ISESTVPILR RRTLSKVDRY TLKVKNNSNG MSDDGYKWRK  120
YGQKSIKHSP NPRSYFKCTN SICNAKKQVE RSIDDPNTYI ITYEGFHLHF TYPFFLSDST  180
HRSNKKPKLK NEAQNKAHFE INPKSQAQEK NKQIKLVKSD YQNCMAYEAD GNTPANLEDG  240
FFPPLIQGWQ QQGLLEDVVA TAIKNIPTND GGLAASRSSL PSYTSSTCSF SRTDSPPLSP  300
SFFKLDSQFF HSGFSDERVQ SDLENFKHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-181131691874Probable WRKY transcription factor 4
2lex_A7e-181131691874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00351.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464688.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 49, partial
SwissprotQ9FHR71e-118WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLA0A397XUN30.0A0A397XUN3_BRACM; Uncharacterized protein
STRINGBra027480.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-120WRKY DNA-binding protein 49