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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00344.1_g00022.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
MIKC_MADS |
Protein Properties |
Length: 241aa MW: 27851.9 Da PI: 9.5766 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00344.1_g00022.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 93.6 | 8.9e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
kri+n++nrqvtfskRrng++KKA+EL +LCdaev +iifsstg+lye+ss
Rsa1.0_00344.1_g00022.1 9 KRIDNSTNRQVTFSKRRNGLMKKAKELAILCDAEVGLIIFSSTGRLYEFSS 59
79***********************************************96 PP
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2 | K-box | 85.6 | 1e-28 | 79 | 170 | 8 | 98 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92
+ +++++ + +q+e+a Lk++++nLq+ +R+++Ge+L+ Ls+++L++Le+qLe sl+ +R kK++llle+i+el +k +++en+
Rsa1.0_00344.1_g00022.1 79 EiNSATEIKFWQTEAAILKRQLHNLQEDHRQMMGEQLSGLSVEDLKKLEHQLELSLRDVRMKKDQLLLEEIHELTRKGILVHQENM 164
24789999****************************************************************************** PP
K-box 93 aLrkkl 98
+L+kk+
Rsa1.0_00344.1_g00022.1 165 DLHKKV 170
****98 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 32.772 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-33 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.40E-44 | 2 | 74 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.2E-25 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.455 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MGRGKIAIKR IDNSTNRQVT FSKRRNGLMK KAKELAILCD AEVGLIIFSS TGRLYEFSSS 60 SMKSVIERYN EVKGETNSEI NSATEIKFWQ TEAAILKRQL HNLQEDHRQM MGEQLSGLSV 120 EDLKKLEHQL ELSLRDVRMK KDQLLLEEIH ELTRKGILVH QENMDLHKKV NLMQQQNMEL 180 YKKVSEVESV KSADKSSLLT NGLRMRDNSS EHVHLQLSQP LQHDETTHSK ALRLSYFSFI 240 S
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}. |