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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_00340.1_g00012.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
ERF |
| Protein Properties |
Length: 310aa MW: 34645.6 Da PI: 5.9482 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00340.1_g00012.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 59.7 | 6.8e-19 | 113 | 163 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
++y+GVr+++ +g+W+AeIrdp r r +lg+f taeeAa ++ a+ +l+g
Rsa1.0_00340.1_g00012.1 113 KKYRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTFNTAEEAALVYDSAAIQLRG 163
59********.**********72....45*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MEPEKNLVLP KIKFTEHKTN TTRTVPSHHQ QPRLIRISVT DPDATDSSSD EEEEEEQNHQ 60
QRFSSKRRRI KKYVNEVVLD SGATTTSTTQ IEPKRRRKRP VIIKPEPAPA PDKKYRGVRQ 120
RPWGKWAAEI RDPLRRVRLW LGTFNTAEEA ALVYDSAAIQ LRGPDALTNF SVPPPTADAK 180
SPKKKSKTKD DVASSSSATS SDCLRSPVSV LRSPFTVDET SAVIVKEEPS ATTASETFSD 240
FSAPMFADDD LFDFRSDFLA GELFGEDVFA DTCTGMNFGF HFGSSGLPNW HVEDHFQDIG 300
DLFGSDPLSV
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 65 | 69 | KRRRI |
| 2 | 92 | 99 | PKRRRKRP |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ckurshumova W,Berleth T
Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
Plant Signal Behav, 2015. 10(7): p. e993293
[PMID:26098229] - Raines T, et al.
The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
Plant J., 2016. 85(1): p. 134-47
[PMID:26662515] - Jeon J,Cho C,Lee MR,Van Binh N,Kim J
CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
Plant Cell, 2016. 28(8): p. 1828-43
[PMID:27432872]
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