PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00339.1_g00040.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 443aa    MW: 50641.2 Da    PI: 7.3291
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00339.1_g00040.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.94.9e-22125231186
                 trihelix   1 rWtkqevlaLiearremeerlrr.gk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                              +Wt+ +v++Li a+ +++++ +  g                    +kk++W++vs++m e+gf++sp+qC++k+++lnkryk++++
  Rsa1.0_00339.1_g00040.1 125 KWTDTMVRLLIMAVFYIGDEAGGlGGggdqtadaakkkisttgilQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVND 210
                              7**************777777642112344556667778888899***************************************** PP

                 trihelix  67 gekkr.tsessstcpyfdqle 86 
                              + +++ +++++++  +++ ++
  Rsa1.0_00339.1_g00040.1 211 ILGRGtACRVVENQGLLETMD 231
                              *****5599999999998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-20123258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MESNVMFSGF SPTMLTLEIP QNPPNPQNPV QFQHPHPHPY TTPDQQTHQH QQQQQQMKPL  60
YPSPYATTKP TTTKQQLSPL SVGGGGEEED DRGSGSGSGC HPEDSSAGTT TTDGKRKISP  120
WHRMKWTDTM VRLLIMAVFY IGDEAGGLGG GGDQTADAAK KKISTTGILQ KKGKWKSVSR  180
AMVEKGFSVS PQQCEDKFND LNKRYKRVND ILGRGTACRV VENQGLLETM DLRLTPKLKD  240
EVKKLLNSKH LFFKEMCAYH NSCGHLDQPQ VPDQVIIPVP VQSKPECFHA GKMGREEEEE  300
SDMAEDSETE IEDTDEDEEE ETRKKRRRVE GVSVKRMREE TARVLDDPGK SAWEKKEWMR  360
RKSLELEERK VGYEWEAVEM EKQKVKWIRY RSKKEREMEK AKLENQRRSL ETERMVLILR  420
RREIEITELQ LAGKRVDPSS ATG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324328KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00339.1_g00040.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485821.10.0PREDICTED: uncharacterized protein LOC108856505
TrEMBLA0A3P5ZLE00.0A0A3P5ZLE0_BRACM; Uncharacterized protein
STRINGBra029813.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-145sequence-specific DNA binding transcription factors