PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00336.1_g00035.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 308aa    MW: 33113.4 Da    PI: 6.5154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00336.1_g00035.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.6e-09161205554
                              HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  Rsa1.0_00336.1_g00035.1 161 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 205
                              99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14154215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-14158215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6161205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MATNNNNNHN LSDQQPPSDD FFEQILGISN FSASSSSGGL SGLPGGLSGP PPMMLQLGSG  60
EEGSHNNHMG GGGGGGPLGF HNGMFPLGLS LDQGKGQSFL KPDGSGKRFQ DDVVGVDNRC  120
SSMKPVFHGQ PMSQPPPPMP HQQSSIRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ  180
ELVPTVNKTD RAAMIDEIVD YVKFLRLQVK VLSMSRLGGA GAVAPLVTEM PLSSSVEDET  240
QAVWEKWSDD GTERQVAKLM EENVGAAMQL LQSKALCIMP VSLAMAIYHS QPPDTSSSVV  300
KPEMNPPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00336.1_g00035.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531530.0AK353153.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439199.11e-178PREDICTED: transcription factor bHLH7
SwissprotQ93Y001e-163BH007_ARATH; Transcription factor bHLH7
TrEMBLA0A3P6CQB71e-171A0A3P6CQB7_BRACM; Uncharacterized protein
TrEMBLM4EX331e-171M4EX33_BRARP; Uncharacterized protein
STRINGBra033368.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-129bHLH family protein