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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00335.1_g00022.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
HD-ZIP |
Protein Properties |
Length: 230aa MW: 26574.9 Da PI: 8.4141 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00335.1_g00022.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 78 | 130 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ ++t+ ql Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
Rsa1.0_00335.1_g00022.1 78 KKRLTSGQLASLERSFQEEIKLDSDRKLKLSRELGLQPRQIAVWFQNRRARWK 130
45699***********************************************9 PP
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2 | HD-ZIP_I/II | 114.3 | 7.4e-37 | 77 | 167 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87
kk+rl++ q+++LE+sF+ee kL+++rK +l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd +++e++ L++ev++L
Rsa1.0_00335.1_g00022.1 77 KKKRLTSGQLASLERSFQEEIKLDSDRKLKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKHLLHEEVRKL 162
9************************************************************************************* PP
HD-ZIP_I/II 88 reelk 92
r+ l+
Rsa1.0_00335.1_g00022.1 163 RALLR 167
*8775 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MEWTTTRNVE NVRIPFMTPP WPESSSFNSL HSSNYDPYAV SSYTPADTQL GPVTSVPESE 60 KTISAYQFSS NNNEMIKKKR LTSGQLASLE RSFQEEIKLD SDRKLKLSRE LGLQPRQIAV 120 WFQNRRARWK AKQLEQLYDS LRQEYDVVSR EKHLLHEEVR KLRALLRDHG LIKKQISGGE 180 DTTEIPSVVI GHPRVENLNN NQISGENQIY GIDQYNNPML IVSSCWPPFP
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 124 | 132 | RRARWKAKQ |
Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC232522 | 1e-103 | AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence. |
GenBank | EU352029 | 1e-103 | EU352029.1 Arabidopsis lyrata At5g03790-like protein gene, partial cds. |