PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HD-ZIP

Protein Properties

Length: 219aa MW: 25363.8 Da PI: 7.4484

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00335.1_g00021.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.4	6.7e-20	78	132	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k++++t+eql Le+ F+++ +++ +++ +L+k+l+L+ rqV vWFqNrRa+++ Rsa1.0_00335.1_g00021.1 78 KKKQKLTTEQLASLEQSFQEDIKLDSDRKVKLSKELHLEPRQVAVWFQNRRARWR 132 78999*************************************************9 PP
2	HD-ZIP_I/II	110.3	1.3e-35	78	166	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk++l++eq+++LE+sF+e+ kL+++rKv+l++eL+l+prqvavWFqnrRAR++ k+lE+ y++L ++yda++++n++L++ev + Rsa1.0_00335.1_g00021.1 78 KKKQKLTTEQLASLEQSFQEDIKLDSDRKVKLSKELHLEPRQVAVWFQNRRARWRVKHLEESYNSLMKEYDAVSRQNQMLHDEVMK 163 59************************************************************************************ PP HD-ZIP_I/II 87 Lre 89 Lr Rsa1.0_00335.1_g00021.1 164 LRG 166 *95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.1E-18	67	133	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	74	134	IPR001356	Homeobox domain
SMART	SM00389	4.3E-18	76	138	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.3E-19	77	139	IPR009057	Homeodomain-like
CDD	cd00086	3.38E-16	78	135	No hit	No description
Pfam	PF00046	4.5E-17	78	132	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	109	132	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MEWSTKSNVE NMRAAFMPLQ WLESNSSSSL QNFSYDPYAG NSFTPVLTQT GPVLSVPESP 60 EKITNACQCP SIDDQMIKKK QKLTTEQLAS LEQSFQEDIK LDSDRKVKLS KELHLEPRQV 120 AVWFQNRRAR WRVKHLEESY NSLMKEYDAV SRQNQMLHDE VMKLRGIILK DHLMKRQINL 180 NNNQMAGGSQ IYGTDQYNNP MCVASTCWPP LSSEQPYPW

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00335.1_g00021.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443240.1	1e-160	PREDICTED: putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	2e-91	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A078HW14	1e-147	A0A078HW14_BRANA; BnaC04g00850D protein
TrEMBL	A0A3P6EHA7	1e-147	A0A3P6EHA7_BRAOL; Uncharacterized protein
STRING	Bo9g181710.1	1e-147	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-91	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]