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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00335.1_g00021.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
HD-ZIP |
Protein Properties |
Length: 219aa MW: 25363.8 Da PI: 7.4484 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00335.1_g00021.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 62.4 | 6.7e-20 | 78 | 132 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+k++++t+eql Le+ F+++ +++ +++ +L+k+l+L+ rqV vWFqNrRa+++
Rsa1.0_00335.1_g00021.1 78 KKKQKLTTEQLASLEQSFQEDIKLDSDRKVKLSKELHLEPRQVAVWFQNRRARWR 132
78999*************************************************9 PP
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2 | HD-ZIP_I/II | 110.3 | 1.3e-35 | 78 | 166 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
+kk++l++eq+++LE+sF+e+ kL+++rKv+l++eL+l+prqvavWFqnrRAR++ k+lE+ y++L ++yda++++n++L++ev +
Rsa1.0_00335.1_g00021.1 78 KKKQKLTTEQLASLEQSFQEDIKLDSDRKVKLSKELHLEPRQVAVWFQNRRARWRVKHLEESYNSLMKEYDAVSRQNQMLHDEVMK 163
59************************************************************************************ PP
HD-ZIP_I/II 87 Lre 89
Lr
Rsa1.0_00335.1_g00021.1 164 LRG 166
*95 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 219 aa
Download sequence Send
to blast |
MEWSTKSNVE NMRAAFMPLQ WLESNSSSSL QNFSYDPYAG NSFTPVLTQT GPVLSVPESP 60 EKITNACQCP SIDDQMIKKK QKLTTEQLAS LEQSFQEDIK LDSDRKVKLS KELHLEPRQV 120 AVWFQNRRAR WRVKHLEESY NSLMKEYDAV SRQNQMLHDE VMKLRGIILK DHLMKRQINL 180 NNNQMAGGSQ IYGTDQYNNP MCVASTCWPP LSSEQPYPW
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Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor. {ECO:0000250}. |