PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00329.1_g00036.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 148aa    MW: 16567.8 Da    PI: 8.2107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00329.1_g00036.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.0002138751254
                             HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             R d+  ++++ L++++ +      +K + a++L+ A +YI  L
  Rsa1.0_00329.1_g00036.1 38 RKDKAGERISALQQIVSPY-----GKTDTASVLQDAFHYIEFL 75
                             56666689999****9999.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.0422675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-73790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-103788IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEFSREAGMM MENKRSVCSL EESSIKRHKS DLSFSSKRKD KAGERISALQ QIVSPYGKTD  60
TASVLQDAFH YIEFLHEQVK VLSAPYLQTM TAATQEELEQ YSLRNRGLCL VPMEYTTGVA  120
QSNGADIWAP VKTPPSPAFG VKSQSPFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00329.1_g00036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5760401e-155AJ576040.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-alpha gene).
GenBankAK2302571e-155AK230257.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-23-B19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451561.11e-108PREDICTED: transcription factor bHLH113-like isoform X2
RefseqXP_018451573.11e-108PREDICTED: transcription factor bHLH113-like isoform X2
SwissprotQ7XJU29e-95BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A078JM071e-105A0A078JM07_BRANA; BnaAnng25330D protein
TrEMBLA0A0D3DJ231e-104A0A0D3DJ23_BRAOL; Uncharacterized protein
STRINGBo8g005780.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.54e-97bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]