PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00326.1_g00023.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 272aa    MW: 30420.2 Da    PI: 8.7364
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00326.1_g00023.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-19126180256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ +++k+q  +Le+ F+++++++ +++  LAkklgLt rqV vWFqNrRa+ k
  Rsa1.0_00326.1_g00023.1 126 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 180
                              677889***********************************************98 PP
2HD-ZIP_I/II122.91.5e-39126215191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rlsk+q+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rLeke +e
  Rsa1.0_00326.1_g00023.1 126 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAE 211
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              Lr +l
  Rsa1.0_00326.1_g00023.1 212 LR-AL 215
                              *9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046189.1E-27294IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.7E-18107180IPR009057Homeodomain-like
SuperFamilySSF466897.94E-19112183IPR009057Homeodomain-like
PROSITE profilePS5007117.054122182IPR001356Homeobox domain
SMARTSM003896.7E-18124186IPR001356Homeobox domain
PfamPF000461.4E-16126180IPR001356Homeobox domain
CDDcd000862.39E-16126183No hitNo description
PRINTSPR000317.0E-6153162IPR000047Helix-turn-helix motif
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PRINTSPR000317.0E-6162178IPR000047Helix-turn-helix motif
PfamPF021837.6E-8182216IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.5E-23182225IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010582Biological Processfloral meristem determinacy
GO:0048467Biological Processgynoecium development
GO:0080127Biological Processfruit septum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMMGKEDLGL SLSLGFAQNH HPLQLNLKPT SSPMSNHQMF PWNQTFVSSS DQQSLRKIDV  60
NSLPSTVDLE EETGVSSPNS TISSTVSGKR RSERQGSGDD LDIALDRSSS RGTSDEEEEY  120
GGDGCRKKLR LSKDQSAVLE DTFKEHNTLN PKQKLALAKK LGLTARQVEV WFQNRRARTK  180
LKQTEVDCEY LKRCVEKLTE ENRRLEKEAA ELRALKLSPG LYGKMSPPTT LLMCPSCERV  240
GGPSNHSQRS VSLNPWLQMA HGSTFDVKHS RS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00050PBMTransfer from AT4G17460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00326.1_g00023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455167.10.0PREDICTED: homeobox-leucine zipper protein HAT1
SwissprotP466001e-178HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLA0A078JMR30.0A0A078JMR3_BRANA; BnaAnng23540D protein
TrEMBLA0A398AQ900.0A0A398AQ90_BRACM; Uncharacterized protein
STRINGBra026255.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.11e-154Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]