 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_00320.1_g00006.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C3H |
| Protein Properties |
Length: 368aa MW: 40831.4 Da PI: 7.8219 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00320.1_g00006.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 21.7 | 3.6e-07 | 80 | 105 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt+ C f + GtC Gd C+FaHg+
Rsa1.0_00320.1_g00006.1 80 YKTRMCAKFKA-GTCMNGDPCNFAHGM 105
9**********.*************95 PP
|
| 2 | zf-CCCH | 17.9 | 5.4e-06 | 175 | 189 | 11 | 25 |
GTS.--TTTTT-SS-S CS
zf-CCCH 11 rtG.tCkyGdrCkFaH 25
G +C+yGdrC+F H
Rsa1.0_00320.1_g00006.1 175 F-GdECPYGDRCNFVH 189
4.559*********** PP
|
| 3 | zf-CCCH | 36.9 | 5.9e-12 | 255 | 280 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC+ f G+C++Gd+C+FaHg+
Rsa1.0_00320.1_g00006.1 255 WKTRLCMKFEN-GQCPFGDNCHFAHGQ 280
8**********.*************97 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 1.96E-8 | 78 | 110 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-14 | 78 | 112 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0051 | 79 | 105 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.061 | 79 | 106 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-6 | 164 | 190 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.022 | 164 | 191 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.042 | 164 | 192 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-7 | 166 | 190 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-8 | 252 | 283 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.0E-14 | 253 | 283 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.5E-7 | 254 | 280 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.901 | 254 | 281 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.4E-9 | 255 | 280 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MDSSYSDSRP MFVQSPWKTN DSMPYPMMMN NEQSESQSQP SLKRPRLNDD TTTSNNNSWM 60
APPSSNTPPM VNRGTAKIFY KTRMCAKFKA GTCMNGDPCN FAHGMEDLRQ PPSNWQEIVG 120
PPPVGDRGRE RERERERPSS SSSVSATNNN NNNNNNWEDD QKIILRMKLC RKFCFGDECP 180
YGDRCNFVHE DLSKFREESG KLRECSVISV GTTDPLSVEN GGSAASHQVD VNRRGGVPVP 240
APLNNGGGGV KTVYWKTRLC MKFENGQCPF GDNCHFAHGQ AELLRHSVGN GEAVNAVGSL 300
SKQTVGSTNE AFAMKPNAAQ VDSSGLNDEG RREKCLLKWS DSKKINRIYG DWIDDLPVGQ 360
KSTKPVES
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 126 | 136 | RGRERERERER |
