PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00306.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 375aa    MW: 42764.8 Da    PI: 7.2683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00306.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.8e-07217239123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C++Cgk F+r  nL+ H+r H
  Rsa1.0_00306.1_g00007.1 217 HYCQICGKGFKRDANLRMHMRAH 239
                              68*******************99 PP
2zf-C2H212.30.00051339354621
                              TTEEESSHHHHHHHHH CS
                  zf-C2H2   6 CgksFsrksnLkrHir 21 
                              Cg++Fsrk+ L++H +
  Rsa1.0_00306.1_g00007.1 339 CGTRFSRKDKLMSHVS 354
                              **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-6215242No hitNo description
PROSITE profilePS5015712.632217244IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-6217244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028217239IPR015880Zinc finger, C2H2-like
PfamPF128740.0025218237No hitNo description
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
SMARTSM00355160269302IPR015880Zinc finger, C2H2-like
SMARTSM0035555307329IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNQEEHMNQG RYIISNGEVS MSCFSETNSS STVYMNPMPV ATRSSEEGDG ISLSLLLNLS  60
TIQDKVHEIQ SLINFFMISP NNNNQKSASS LAMSNVGSLV QEMITAASSM MHTCQQLQIS  120
TSNNSSDDAN QTADGMFMEF SQDFDPDHDF MGESSTNLLG LQERGHDSFL DQTGQNLDWY  180
GTQTTNPKND HQRSKSRYGN YEIVELSVED LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG  240
DEYKTREALI NPTSRDKTVE YSSLMRHYYS CPQQGCRWNQ RHEKFQPLKS VICAKNHYKR  300
SHCPKIYMCR RCNVKHFSVL SDLRTHEKHC GDIKWVCSCG TRFSRKDKLM SHVSLFSGHS  360
PAHEPSQQQP SMITP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00306.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444949.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ0WT240.0STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A3N6QGJ30.0A0A3N6QGJ3_BRACR; Uncharacterized protein
STRINGBra002438.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-177C2H2 family protein