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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00301.1_g00043.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 607aa MW: 65995.7 Da PI: 6.4111 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00301.1_g00043.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 94.6 | 7.2e-30 | 174 | 233 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+H h+
Rsa1.0_00301.1_g00043.1 174 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHSHP 233
58***************************99****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 607 aa
Download sequence Send
to blast |
MSEVKKENEK LKRMLKRIES DYKSLKLRFF DVFQQEPSNK PTQDQNVVDL RTDLSSSDQE 60 GNLVSLSLGR RSSSPSDNTS NKEEKVDVIT KVVNSDEELT KAGLTLGFNN SNDREQNESL 120 SIVNSSEEAS KVTGKRSSPA PPDSGGDADG EAGQQNNVKR ARVCVRARCD TPTMNDGCQW 180 RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK QVQRCAEDMS ILITTYEGTH SHPLPLSATT 240 MASTTSAAAS MLLSCSSSSS AAKMIGNNLY DSSRFINNNN SKSFYAPTLH SPLHPTVTLD 300 LTTPQHYTST SLPSLNFNKL SNSFQRFPST SLNFSSSSSY TPYPYNNVQF GPSNLGKTVQ 360 NSQSLTETLT KALTSDPSFH SVVAAAISSM VGSNGEQQIV GPRHPNSNSI HQTAATNDIK 420 GRGGYFSSLL ASNIIANNQT GAFLDQPSSQ LPPLSMFKRP SSSSTTGSFV NKDEKSLSAY 480 LLNFDEEKLL DGSDSMARVS VLLCLVLLVT LGVVVSFSFA HGTETTQSTL QHQESSKTAT 540 TLDHKSEHKV QGGQQVMGGQ GQHDHKKKGD HTDDDTDTDD DHTDDDTDDD TDDDDDDKAK 600 KKTVKAL
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189232 | 0.0 | AC189232.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013N08, complete sequence. |