 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_00301.1_g00042.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 286aa MW: 33055.8 Da PI: 6.8778 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00301.1_g00042.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.3 | 5.2e-18 | 93 | 145 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k
Rsa1.0_00301.1_g00042.1 93 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 145
4568889*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 128.6 | 2.6e-41 | 91 | 182 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
ekk+rl+ eqv++LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++
Rsa1.0_00301.1_g00042.1 91 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKK 176
69************************************************************************************ PP
HD-ZIP_I/II 87 Lreelk 92
L++el
Rsa1.0_00301.1_g00042.1 177 LHAELV 182
**9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MAFPQHGFMF QQLHEENAHH LPSPTSLPSC PPHLFYGGGD YMMNRSMSFT GVSDHHHLTQ 60
KSPTMTNMND QDQLGEEDNL SDDGSHMMLG EKKKRLNLEQ VRALEKSFEL GNKLEPERKM 120
QLAKALGLQP RQIAIWFQNR RARWKTKQLE RDYDSLKKQF DVLKSDNDSL LAHNKKLHAE 180
LVALKKQDRK EPSKIKRELA EASWSNNEDT ENNNSSDINH VNMIKDLFPS SVRSATTTTT 240
SSHIDHQMVQ DQGFCNMFNG IDETTSASYW AWPDQQQQHQ SHHQFN
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 139 | 147 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK229364 | 0.0 | AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06. |
| GenBank | BT044059 | 0.0 | BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds. |
