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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00296.1_g00006.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 420aa MW: 46130.1 Da PI: 9.7858 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00296.1_g00006.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 98 | 6e-31 | 156 | 212 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
DgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkvers +++ ei+Y+geHnh+k
Rsa1.0_00296.1_g00006.1 156 DGYNWRKYGQKQVKGSDCPRSYYKCTHPKCPVKKKVERSM-GGQASEIVYQGEHNHSK 212
9***************************************.***************85 PP
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2 | WRKY | 102.9 | 1.8e-32 | 340 | 397 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver+++dp+++++tYeg+Hnh+
Rsa1.0_00296.1_g00006.1 340 EDGFRWRKYGQKVVGGNAHPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHH 397
8********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009957 | Biological Process | epidermal cell fate specification |
GO:0010214 | Biological Process | seed coat development |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 420 aa
Download sequence Send
to blast |
MEVKESERVV IAKPIASRPS CSSIRTFTDL LTDSVTISPH EAVDVAAIRP KTLRFKQPAV 60 ASVSYPPVDG KDKGKSCDDS DSKSYVVYKP KAKLVSQATV SALANMGSRQ QVWRQSEAIS 120 SYGKSGSQGR SGPNLVPRVP SFNESETSSG DRSSVDGYNW RKYGQKQVKG SDCPRSYYKC 180 THPKCPVKKK VERSMGGQAS EIVYQGEHNH SKPSCPLPRR ASSSSSSGLQ KPQRELASER 240 SIGQDPNSVY YHPLWSTQSS DSSKSITERM NEGCVITPFE FAVPRPANSS GGTSDSGCRS 300 SSQCDEGELD DPSRNKRRKN EKQASQTGVS QSSGESDSLE DGFRWRKYGQ KVVGGNAHPR 360 SYYRCTSANC RARKHVERAS DDPRAFITTY EGKHNHHLHL RPPTSPALPF TSTQHSNQAI
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FJ012168 | 0.0 | FJ012168.1 Brassica napus WRKY44 transcription factor (WRKY44) mRNA, complete cds. |
Publications
? help Back to Top |
- Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
Using biologically interrelated experiments to identify pathway genes in Arabidopsis. Bioinformatics, 2012. 28(6): p. 815-22 [PMID:22271267] - Simon M, et al.
Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes. Plant Cell, 2013. 25(9): p. 3175-85 [PMID:24014549] - Ranocha P,Francoz E,Burlat V,Dunand C
Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128] - Verweij W, et al.
Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis. Plant Cell, 2016. 28(3): p. 786-803 [PMID:26977085] - Gonzalez A, et al.
TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway. Dev. Biol., 2016. 419(1): p. 54-63 [PMID:27046632] - Hassani-Pak K, et al.
Developing integrated crop knowledge networks to advance candidate gene discovery. Appl Transl Genom, 2016. 11: p. 18-26 [PMID:28018846]
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