PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00293.1_g00041.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 278aa MW: 32085.5 Da PI: 8.91

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00293.1_g00041.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36	1.3e-11	32	111	13	97
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ ++p +f+++ +g + l++ ++g+sW+v l ++ ++ ++ ++ W eFv++n L+ +D+++F++++++ + v+++ Rsa1.0_00293.1_g00041.1 32 KSKRIIPEEFVRRTNGA--FKHRLVFSVSWGNSWQVWL--QRDENGlFMEEEDWDEFVDDNLLDPNDILIFTHVHTMFT--EVRIY 111 455799***999655..4447***********..88888879999*******************9997766..55555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.9E-13	14	114	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-14	15	114	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.05E-10	17	112	No hit	No description
SMART	SM01019	1.3E-13	19	114	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.124	20	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-9	31	109	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	7.06E-7	176	272	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.3E-6	177	271	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0011	183	274	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MTLNSAFDLL QENASKPRFC KSLSLGETWK SKSKRIIPEE FVRRTNGAFK HRLVFSVSWG 60 NSWQVWLQRD ENGLFMEEED WDEFVDDNLL DPNDILIFTH VHTMFTEVRI YKKDSRFFKQ 120 VISSPLLAAE VLSPKPQTFR QDTPSSASPG FASASASASR ARQSCSSVQN PEQYLLNPQN 180 PYFVKTLSKK IDVLYVNQDV IQKYGLKFGP HLSPVHYLLP REKHEAVLKI YRNNTPCFNR 240 WAAICKKYDK KEGDSVVCEL ERDSRGVVTA VRVHFVNE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00293.1_g00041.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189520	7e-87	AC189520.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091J13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437705.1	0.0	PREDICTED: B3 domain-containing protein At5g25470-like
Swissprot	Q1PDT6	9e-98	Y5547_ARATH; B3 domain-containing protein At5g25470
TrEMBL	A0A3P6AUT4	1e-160	A0A3P6AUT4_BRACM; Uncharacterized protein
STRING	Bra020501.1-P	1e-154	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4491	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25470.2	3e-88	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]