PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00291.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 34452.9 Da PI: 8.4792 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.6e-17 | 72 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia++++ gR++k+c++rw++ Rsa1.0_00291.1_g00010.1 72 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 117 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55.1 | 1.8e-17 | 124 | 167 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +++eE+e l +a++++G++ W+ Iar ++ gRt++++k++w+ Rsa1.0_00291.1_g00010.1 124 RRTFSEEEEEMLMQAHNLYGNK-WAMIARLFP-GRTDNSVKNHWHV 167 6689******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.603 | 67 | 118 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.75E-29 | 71 | 165 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-14 | 71 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 72 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-26 | 73 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.49E-13 | 75 | 116 | No hit | No description |
PROSITE profile | PS51294 | 25.344 | 119 | 173 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-15 | 123 | 171 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 124 | 166 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-21 | 126 | 172 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.81E-11 | 126 | 166 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MSEDHRRWMD QIASCDYFSF DFSSYQHSGH YYASHREEEI KNPNQSNNGN CSKKETRVCG 60 NFRHSSKASA ARGHWRPAED AKLKELVALY GPQNWNLIAE KLQGRSGKSC RLRWFNQLDP 120 RINRRTFSEE EEEMLMQAHN LYGNKWAMIA RLFPGRTDNS VKNHWHVIMA RKFREQSSVY 180 RRRKTLIPLK PLVNPSPLSC NGFDPTRSDM IHLVSNDQNH LMLPIPCFPG YAHENESPLM 240 LGMLQNQMMV DDYSARTREA TTFDFLNQTE KCEMLGDGMN EQKKPHFIDF LGLGTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-33 | 71 | 173 | 6 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00291.1_g00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013694796.2 | 0.0 | transcription factor MYB105-like | ||||
Swissprot | Q9SEZ4 | 1e-156 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | A0A3N6QQZ0 | 0.0 | A0A3N6QQZ0_BRACR; Uncharacterized protein | ||||
STRING | Bo6g095400.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1210 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-154 | myb domain protein 105 |
Publications ? help Back to Top | |||
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