PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00291.1_g00009.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 391aa MW: 43512.1 Da PI: 9.1405

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00291.1_g00009.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.4e-38	125	184	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s+ntkfCyynny++sqPryfC++C+ryWt+GG++rnvPvG+grrknk + Rsa1.0_00291.1_g00009.1 125 PDKILPCPRCESANTKFCYYNNYNVSQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGW 184 7899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	122	182	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.0E-32	127	182	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.546	129	183	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	131	167	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MSKSRDTEIK LFGRTITSLV AVNHYDPSPL STAHGGSDQS KEASSSSSSS CSPFIRPDRV 60 FADKNEKENS RFKDPYTLSH LNEPPKAASE ILSPISSKTN TDQQSEITTT TSTSAADKHT 120 TLKKPDKILP CPRCESANTK FCYYNNYNVS QPRYFCRNCQ RYWTAGGSMR NVPVGSGRRK 180 NKGWPSSNHY LHVTSEDYEN NNNNSGTILS FGSLESSVTE TGKHQPGDTK IISDSAPQEQ 240 KTRQGFLPPQ VMFANNSSPW PYSHQWSPTG PNANFYPIPF YWGCTVPIWP TSETPPCLGK 300 RSRDQTEGGI KEATTITTSR LVSESLSIKE ANKTAVWSTK PERKTEGFNL FDGFETKRSN 360 GRSLVPETSI NLQANPAAMS RSMNFRENIQ Q

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MSKSRDTEIK LFGRTITSLV AVNHYDPSPL STAHGGSDQS KEASSSSSSS CSPFIRPDRV  60
FADKNEKENS RFKDPYTLSH LNEPPKAASE ILSPISSKTN TDQQSEITTT TSTSAADKHT  120
TLKKPDKILP CPRCESANTK FCYYNNYNVS QPRYFCRNCQ RYWTAGGSMR NVPVGSGRRK  180
NKGWPSSNHY LHVTSEDYEN NNNNSGTILS FGSLESSVTE TGKHQPGDTK IISDSAPQEQ  240
KTRQGFLPPQ VMFANNSSPW PYSHQWSPTG PNANFYPIPF YWGCTVPIWP TSETPPCLGK  300
RSRDQTEGGI KEATTITTSR LVSESLSIKE ANKTAVWSTK PERKTEGFNL FDGFETKRSN  360
GRSLVPETSI NLQANPAAMS RSMNFRENIQ Q

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00223	DAP	Transfer from AT1G69570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00291.1_g00009.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018442819.1	0.0	PREDICTED: cyclic dof factor 5-like
Refseq	XP_018442840.1	0.0	PREDICTED: cyclic dof factor 5-like
Swissprot	Q9SEZ3	0.0	CDF5_ARATH; Cyclic dof factor 5
TrEMBL	A0A0D3CXN1	0.0	A0A0D3CXN1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6HBJ4	0.0	A0A3P6HBJ4_BRAOL; Uncharacterized protein
STRING	Bo6g095390.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13090	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	1e-179	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689] Martín G, et al. Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis. Curr. Biol., 2018. 28(2): p. 311-318.e5 [PMID:29337078]