PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00285.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 264aa    MW: 30592.7 Da    PI: 7.3024
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00285.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-1386135152
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIk 52 
                              ++ +hn+ Er RR+++N  ++ Lr llP+ +   +++Kls  +++  +v+YI 
  Rsa1.0_00285.1_g00009.1  86 KKLNHNASERDRRRKLNALYSSLRALLPPsD---QKRKLSIPMTVAGVVKYIP 135
                              6789*************************66...9999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.97385137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-1385163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.42E-1185142No hitNo description
Gene3DG3DSA:4.10.280.105.0E-1286156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-1186135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-891143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MCALTPMFPC YQQEWYSTST MESPWLDSFS PTLPSFLYPS LDQPDEFKNH NINFHPHHMN  60
LAHINGSNKN SNNDQKEDER ELVLEKKLNH NASERDRRRK LNALYSSLRA LLPPSDQKRK  120
LSIPMTVAGV VKYIPEQEQE LERLSRRKEE LMKTISSKTA TLSHQQEQLR HRAMMDSVDS  180
SPQKIAANWI TDTEIAVQIA TWKWASISDM LLRLEENGLN VTSVSSSVSS TSRIFYTMHL  240
QMRGDCKVRL EELSDMLFGL RQSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00285.1_g00009.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:17516080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530500.0AK353050.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474933.11e-178PREDICTED: transcription factor bHLH101
SwissprotQ9FYE61e-100BH101_ARATH; Transcription factor bHLH101
TrEMBLA0A397ZRW41e-148A0A397ZRW4_BRACM; Uncharacterized protein
STRINGBo3g002630.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.15e-87bHLH family protein
Publications ? help Back to Top
  1. Maurer F,Naranjo Arcos MA,Bauer P
    Responses of a triple mutant defective in three iron deficiency-induced Basic Helix-Loop-Helix genes of the subgroup Ib(2) to iron deficiency and salicylic acid.
    PLoS ONE, 2014. 9(6): p. e99234
    [PMID:24919188]
  2. Martínez-Trujillo M, et al.
    Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.
    Plant Mol. Biol., 2014. 86(1-2): p. 35-50
    [PMID:24928490]
  3. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  4. Van Dingenen J, et al.
    Strobilurins as growth-promoting compounds: how Stroby regulates Arabidopsis leaf growth.
    Plant Cell Environ., 2017. 40(9): p. 1748-1760
    [PMID:28444690]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  6. Kailasam S,Wang Y,Lo JC,Chang HF,Yeh KC
    S-Nitrosoglutathione works downstream of nitric oxide to mediate iron-deficiency signaling in Arabidopsis.
    Plant J., 2018. 94(1): p. 157-168
    [PMID:29396986]
  7. Kurt F,Filiz E
    Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: insights into iron (Fe) homeostasis.
    Biometals, 2018. 31(4): p. 489-504
    [PMID:29546482]