PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 370aa MW: 41997.3 Da PI: 9.1215

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00279.1_g00020.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.8	2.5e-22	26	71	6	51
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +s r ++++kR+ +++KKA+ELS+LC++ev+vi+++s g+l+++++ Rsa1.0_00279.1_g00020.1 26 SSLRATSLAKRQVTVFKKAQELSILCGIEVCVIYYGSGGELKTWPK 71 789*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.2E-6	12	72	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.01E-17	25	104	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-13	27	69	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.33E-16	29	93	No hit	No description
PROSITE profile	PS50066	12.306	29	73	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MSSSSLSCLP SSSSSRIRQT LVQKTSSLRA TSLAKRQVTV FKKAQELSIL CGIEVCVIYY 60 GSGGELKTWP KDREKVKDMA RRYIQLSDVK RRKGQDDLDQ FLKKIDKDDS KNNNKKKKVK 120 LGSSCKYPDW DPRFDHCSVE QLTDLIQSLE CTQTKLQHRI RGLVESQRQR NVHYTNMAGQ 180 EQMITTTTTP RMKHLQQHSN QVSMDMYNHG ISTLPQLPST SAFNQAQSLA PIPNSLAMHQ 240 NPNMGSYSRL LGVQESGLDE ILSMNMLPYN SINTNCANVF PNLFQQNCYN MEDYSGFLGP 300 QETSINNMNG EDYSGLLWTQ GTGTNVDMFG YNNNINNPNG FSQQFVQYPT QRAPPGFQYM 360 DRSTQSVRPF

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MSSSSLSCLP SSSSSRIRQT LVQKTSSLRA TSLAKRQVTV FKKAQELSIL CGIEVCVIYY  60
GSGGELKTWP KDREKVKDMA RRYIQLSDVK RRKGQDDLDQ FLKKIDKDDS KNNNKKKKVK  120
LGSSCKYPDW DPRFDHCSVE QLTDLIQSLE CTQTKLQHRI RGLVESQRQR NVHYTNMAGQ  180
EQMITTTTTP RMKHLQQHSN QVSMDMYNHG ISTLPQLPST SAFNQAQSLA PIPNSLAMHQ  240
NPNMGSYSRL LGVQESGLDE ILSMNMLPYN SINTNCANVF PNLFQQNCYN MEDYSGFLGP  300
QETSINNMNG EDYSGLLWTQ GTGTNVDMFG YNNNINNPNG FSQQFVQYPT QRAPPGFQYM  360
DRSTQSVRPF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00279.1_g00020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018487580.1	0.0	PREDICTED: agamous-like MADS-box protein AGL103
Swissprot	Q9LSB2	1e-100	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	A0A3P5Z8I5	0.0	A0A3P5Z8I5_BRACM; Uncharacterized protein
STRING	Bra022341.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	4e-96	AGAMOUS-like 103

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]