PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00270.1_g00019.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 319aa MW: 36995 Da PI: 8.035

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00270.1_g00019.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.8e-12	158	206	1	52
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +r +h ++Er+RR+++N+ ++ Lr llP++ + ++ + a+i+ A++Y k Rsa1.0_00270.1_g00019.1 158 QRINHIAAERNRRRQMNEHINSLRLLLPPS---YIQRGDQASIVGGAINYAK 206 699*************************...9**************66 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-14	156	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.20E-8	156	210	No hit	No description
PROSITE profile	PS50888	14.907	157	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-11	157	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-9	158	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-7	163	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MERFQGQINP CFLDRKTDAR SLEVQGFAEA QSFAFKEEEE EESMQDTVPF LQILQSEEPS 60 FLRLLSLQNL KETWEIERFL SHEGYPHFYQ NQVSASSIEG TKQALSSQEA DVILLRSSSS 120 PTQHKRKNRD LLAPYMTREK RKRRKTKPSQ NIEEIENQRI NHIAAERNRR RQMNEHINSL 180 RLLLPPSYIQ RGDQASIVGG AINYAKVLEQ IILSLELQKR TQHSRVENRV HEDETCAPRI 240 EATLIQNHVN LRVVCRKKQG QLIKGIISLE KLRLTVLHLN IATTSHLLVS YRFNLEMENG 300 CELESANDIT KAAHQIFDI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	144	KRKNRDLLAPYMTREKRKRRK
2	139	144	KRKRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00270.1_g00019.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480977.1	0.0	PREDICTED: transcription factor bHLH67-like
Swissprot	Q700E4	1e-131	BH067_ARATH; Transcription factor bHLH67
TrEMBL	A0A078J1M2	1e-176	A0A078J1M2_BRANA; BnaCnng29550D protein
STRING	XP_006292401.1	1e-137	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61950.1	1e-129	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development. J. Exp. Bot., 2015. 66(5): p. 1543-52 [PMID:25582452]